Ideonella dechloratans: LRM40_04695
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Entry
LRM40_04695 CDS
T07737
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase
KO
K01928
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:
6.3.2.13
]
Organism
idc
Ideonella dechloratans
Pathway
idc00300
Lysine biosynthesis
idc00550
Peptidoglycan biosynthesis
idc01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
idc00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
LRM40_04695
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
LRM40_04695
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
idc01011
]
LRM40_04695
Enzymes [BR:
idc01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.13 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate---2,6-diaminopimelate ligase
LRM40_04695
Peptidoglycan biosynthesis and degradation proteins [BR:
idc01011
]
Precursor biosynthesis
Amino acid ligase
LRM40_04695
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
Mur_ligase
Motif
Other DBs
NCBI-ProteinID:
UFU10980
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All DBs
Position
1000074..1001591
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AA seq
505 aa
AA seq
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MSITHLKSPEAAARWLQSWVTGTLRTDSRLVQPGDGFIAWPGQVTDGRQYVQAALDAGAA
TCIVELEGIEAYGFEDSRVAALPNLKEATGRIADAYFGRPSDALKVVAVTGTNGKTSSAW
WTAQALGMLDRPCGLVGTLGVGTPPVPGRGEGHIRFTGLTTPDPVVLQASFADMVRQGLR
ACAIEASSIGIAEERMAGTRIAVALFTNFTRDHLDYHGDMAAYWTEKRRLFGWDGLKSAV
INVDDPQGAKLVAELAGSGLDLWTVSAQGEARIQAREVGYTAQGLRFLLAEAGGEQDLPV
QTGLIGQYNISNLLGVIGGLRALGVPLTDAALVAHHITPVPGRMQRVSAGAGQPEVVVDY
AHTPDALEKAVEALRPMAQARGGQLWCVFGCGGDRDATKRPLMGAIAQQRADRVVVTSDN
PRHENPQAIVDQIVAGMSDPTGSLKVQIEVDRRLAILQTLAAAGPQDVVLLAGKGHEDYQ
DVAGVKHPFSDLEVAQAGLHARSAA
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcacccacctgaaaagtcccgaagcggccgcacgctggctgcagtcctgggtc
accggaaccctgcgcaccgacagccgactggtgcagccgggcgacggtttcatcgcctgg
cccggtcaggtcaccgatggccgccagtacgtgcaggccgccctggacgccggggccgcc
acctgcatcgtcgagctcgagggcatcgaggcctacggcttcgaggactctcgcgtggcc
gcgctgccgaacctgaaggaggccaccggccgcatcgccgatgcctacttcggccgcccc
agcgatgcgttgaaggtcgtcgccgtcactggcaccaatggcaagacctccagcgcctgg
tggacggcccaggccctgggcatgctggaccggccctgcggcctggtgggcacgctgggc
gtgggcaccccgccggtgccgggccggggcgaaggccacatccgcttcaccggcctgacc
acgccggacccggtggtgctgcaggccagctttgccgacatggtccggcaggggctgcgg
gcctgcgcgatcgaggcctcgtccatcggcatcgccgaggagcgcatggccggcacgcgc
atcgcggtggccctgttcaccaacttcacccgcgaccacctggactaccacggcgacatg
gccgcctactggaccgagaagcgccgcctcttcggctgggacggcctgaagtccgcggtg
atcaacgtggacgacccgcagggcgccaagctggtggccgaactggccggcagcgggctg
gatctgtggacggtctcggcccagggcgaggcccgcatccaggcacgtgaagtgggctac
accgcccagggcctgcgcttcctgctggccgaggccggcggcgagcaggacctgccggtg
cagaccggcctgatcggccagtacaacatcagcaacctgctgggcgtgatcggcggcctg
cgcgcgctgggcgtgccgctgaccgatgcggccctcgtcgcccaccacatcaccccggtg
ccgggccgcatgcagcgcgtcagcgccggtgcaggccagcctgaagtggtggtggactac
gcccacacccccgatgcgctggaaaaggccgtggaggcgctgcgccccatggcccaggcc
cgcggtggccagctctggtgcgtgttcggctgcgggggggaccgcgacgccaccaagcgc
ccgctgatgggcgccatcgcccagcagcgcgccgaccgcgtggtcgtcaccagcgacaac
ccgcgccatgagaacccgcaggccatcgtcgaccagatcgtggccggcatgagcgatccg
acgggttcgctcaaggtgcagatcgaggtggaccgccgcctggccatcctgcagaccctg
gccgcggccggtccgcaggacgtggtgctgctggccggcaagggccacgaggactaccag
gacgtggccggcgtgaagcaccccttctcggatctcgaggtggcccaggccgggctgcac
gccaggagcgccgcgtga
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