Idiomarina sp. OXR-189: UM402_01840
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Entry
UM402_01840 CDS
T11485
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
idx Idiomarina sp. OXR-189
Pathway
idx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
idx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UM402_01840 (rpoB)
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NCBI-ProteinID:
WPZ01669
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Position
372848..376876
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AA seq
1342 aa
AA seq
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MAYSYSEKKRIRKDFGKRPQVLEVPYLLSMQLDSFKKFIEVDPDANNGLEAAFRSVFPIA
SYSGNAELQYVSYHMGEPAFDVEECQIRGITYSAPLRVKLRLVLFDKEAAAGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKSHSSGKVLYNARVIPYR
GSWLDFEFDPKDNVFVRIDRRRKLPASIILRALDYSTEEMLDMFFETTYFEILKTKVKME
LVPERLRGETAKFDIKGADGEVLVEKGRRITARHIRQLEKLDIKEMDVPTEYMVGKVLAK
DYADKKTGEVIGHANDVLTLELIAALSEAGIKKIETLFVNDLDHGPYMSETLRVDSTTNR
LEALVEIYRMMRPGEPPTREAAEALFDNLFFSEERYDLSTVGRMKFNRRLGRDDLSGDNT
LSKEDIIDVMKKLIEIRNGLDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERL
SLGDLDNTMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLT
RERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSSFSRTNEYGFLETPYRRIENGVV
TDDVDYLSAIEEGNYVIAQANVGLNDKGELTEDLVPCRHKNEFTLMSKEQVQYMDVAPQQ
IVSIAASMIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERTIAVDSGVTVVAK
RGGVVDYVDASRIVVKVNEEEMVPGEAGIDIYNLTKYTRSNQNTCINQKPTVNPGEPVTR
GDVLADGPSTDLGELALGQNLRVAFMPWNGYNFEDSILISERVAQEDRLTTIHIQELNCV
ARDTKLGAEEITSDIPNVGESALGKLDEAGVVYVGAEVNGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNGVNGTVIDVQVFTRDGVEKDKRAVAIEEMQLAKVKKD
LTEEFKILEEGIYNRARNLLLANGFDEAKLASMDRKNWLTQDLGSEDAQAQLEQIAEQYQ
QISDDFDTKYENKRRKITQGDDLAPGVLKIVKVYLAVKRSIQPGDKLAGRHGNKGVISTI
IPVEDMPHDDEGNPVDIVLNPLGVPSRMNIGQVLETHLGMAARGIGSKIDKMLKQQRAMK
ELRDFLQQVYDLGECRQKVDISEFSDDEVMRLAGNLKAGLPTATPVFDGAVEEEIKELLK
LADLPESGQIPLFDGRTGDKFERDVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDNNLQMEAGMP
ESFNVLLKEIRSLGINIELEQN
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggcgtactcctactctgagaaaaaacgtattcgtaaggactttggtaaacgaccgcag
gtcttagaagtaccttatttgctgtctatgcagcttgattcatttaagaaatttattgaa
gtcgatccagatgccaataacggcttggaagcggcttttcgttcggtttttcccattgcc
agctactcaggtaatgcggaactgcagtacgtcagttatcacatgggtgagccggcgttt
gacgttgaagaatgtcaaattcgtggtattacctactcagcacctctgcgtgtgaaactg
cgtctggtcctgtttgataaagaagcagcagccggcacggttaaagacattaaagagcaa
gaagtgtacatgggcgaaattccgttaatgacagaaaacggaaccttcgttatcaatggt
acagaacgagttatcgtttctcagcttcaccgctctccaggtgtcttttttgaccatgac
aaaggtaaatcacattcgtcaggtaaagttctgtataacgcacgagttatcccataccgt
ggctcgtggttagactttgagtttgatcctaaagacaacgtgttcgttcgtatcgaccgt
cgccgtaaattaccggcgtctattattcttcgtgcactagactacagcaccgaagaaatg
ctcgatatgttcttcgaaacaacctacttcgaaatcttgaaaaccaaagtcaagatggag
ttggtgcctgaacgtcttcgcggcgaaactgcgaagttcgacatcaaaggtgctgatggt
gaagtattggttgaaaaaggccgtcgtattaccgcacgccatattcgtcagttagagaaa
ctggacattaaagaaatggacgtgccgactgaatacatggtcggaaaagtattagcaaaa
gactacgccgataagaaaacaggcgaagttattggccacgcaaatgacgtattaacgctt
gagttaattgcggcattgagcgaagccggtattaagaaaattgaaacgctgtttgtgaat
gatttggaccacggtccttacatgagcgaaacgctgcgcgtagattcaaccacaaaccgt
ttggaagcgttggttgaaatctatcgtatgatgcgcccaggcgaaccaccgactcgcgaa
gcagcagaagcattattcgataacttattcttcagcgaagagcgttacgacttatcgacc
gttggtcgcatgaagtttaaccgccgtttaggtcgtgatgacttaagtggtgataacacg
ttgtcgaaagaagacattatcgatgtcatgaagaagcttatcgagattcgtaacggtctt
gatgaagtggatgatatcgatcacttgggtaaccgccgtattcgttcggttggtgaaatg
gcggaaaaccaattccgtgtaggtcttgtacgtgttgagcgtgccgttaaagagcgttta
tctcttggcgatttagacaacaccatgccacaagacctgattaacgcgaagccaatcagc
gctgccgtgaaagagttctttggctcaagccaattgtctcagttcatggaccaaaacaac
ccgctgtcagaagtcacgcacaagcgtcgtatttctgcattaggtccgggtggtttgacg
cgtgaacgtgcaggtttcgaagttcgagacgtacacccgacccactatggtcgcttgtgt
ccaatcgagacgccggaaggtccgaacatcggtcttattaactcgctgtcgagcttctca
agaacgaacgagtacggtttccttgagacgccttaccgccgtattgaaaatggtgtcgtt
actgacgatgtcgactacttgtcagccattgaagagggcaactatgttatcgctcaggcg
aacgtagggcttaatgacaaaggtgagttaaccgaagacttagtgccttgccgacacaaa
aacgaatttacattgatgagtaaagagcaagttcagtatatggacgttgctcctcagcaa
atcgtgtcaattgcagcaagcatgattccattccttgagcacgacgatgctaaccgtgct
ttgatgggatcaaacatgcaacgccaggcggtaccaacactacgtgcagataagccgtta
gttggtactggtattgaacgcactatcgcggtcgactcgggtgttaccgttgttgctaaa
cgtggtggtgtcgttgattacgtcgatgcgagccgcatcgtagttaaagtaaatgaagaa
gaaatggtgccgggtgaagcaggtatcgacatttacaacttaactaagtacacacgctct
aaccaaaacacctgtattaaccagaaaccaacggttaatcctggtgagccggtaacgcgt
ggcgatgtattggcagatggcccgtcgacagacttaggtgaattggctcttggccaaaac
ctacgtgtcgcgttcatgccttggaatggttataactttgaggattcaatccttatctcc
gagcgtgttgcgcaagaagaccgtttaaccactattcacattcaagaactgaactgtgtt
gctcgtgacaccaaattgggcgctgaagaaattacttcagatattccgaatgttggtgag
tcagcgctgggcaaacttgatgaagccggtgttgtttatgttggtgctgaagttaatggc
ggcgacatactggtcggtaaagtgacacctaaaggcgaaacacagttaacgccagaagag
aagcttttgagagctatcttcggtgaaaaagcgtcagacgttaaagatagctcgctgcgt
gttcctaacggtgttaacggtactgttattgacgtgcaagtctttactcgcgatggcgtt
gaaaaagataaacgtgccgttgctatcgaagagatgcaactggcgaaggttaagaaagac
ctgacagaagaatttaagattcttgaagaaggtatctacaaccgtgcgcgcaacttgcta
ttagctaatggcttcgatgaagctaaattagcaagcatggaccgtaaaaactggttaact
caggacttaggttctgaagacgctcaagcgcaattagaacaaattgccgagcagtaccag
caaattagtgacgatttcgatacgaagtacgaaaacaagcgtcgtaaaatcactcaaggt
gatgatttagcgcctggcgtactgaaaatcgtaaaagtctacttagcggtcaaacgtagc
attcagcctggtgataaattggctggtcgtcacggtaacaaaggtgttatctctactatc
atcccagttgaggacatgcctcacgatgatgaaggtaacccggtagatatcgtattgaac
ccattgggtgtaccgtcgcggatgaacatcggtcaggtgttggaaacacacttgggtatg
gctgctcgcggaattggtagcaaaatagacaagatgctgaagcagcagcgagcaatgaaa
gagctgcgcgacttcttacagcaagtttatgacctgggtgagtgccgccagaaagtcgat
atcagtgagttttctgatgacgaagtgatgcgcttagcaggtaacctaaaagcaggtctg
ccaacagcaacaccagtatttgatggtgcggttgaagaagaaattaaagagcttctgaaa
ctagcagatttacctgaatcgggtcagataccactgtttgacggtcgcacgggtgataag
tttgagcgtgatgtgactgttggttacatgtacatgctgaaactaaaccacttggtcgac
gacaagatgcacgctcgttctaccggctcttacagcttggtaactcagcagccattgggt
ggtaaagcacagtttggtggtcagcgcttcggtgagatggaagtctgggcattagaagca
tacggtgctgcatacaccttgcaagaaatgttgacggttaagtcggacgacgtaaacggt
cgtacgaagatgtacaaaaacatcgtcgacaataacctgcaaatggaagcgggtatgcca
gagtcgttcaacgtattgttgaaagaaattcgctctctgggcatcaatatcgagctggaa
cagaactaa
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