Iocasia fonsfrigidae: GM661_15765
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Entry
GM661_15765 CDS
T07718
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ifn
Iocasia fonsfrigidae
Pathway
ifn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ifn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GM661_15765 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifn03021
]
GM661_15765 (rpoC)
03400 DNA repair and recombination proteins [BR:
ifn03400
]
GM661_15765 (rpoC)
Enzymes [BR:
ifn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GM661_15765 (rpoC)
Transcription machinery [BR:
ifn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GM661_15765 (rpoC)
DNA repair and recombination proteins [BR:
ifn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GM661_15765 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
DUF6513
NusG_add
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QTL99307
UniProt:
A0A8A7KKC7
LinkDB
All DBs
Position
complement(3280561..3284043)
Genome browser
AA seq
1160 aa
AA seq
DB search
MFNVNNFDSMKISVASPEQIRDWSRGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDYEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPCTHIWYFKGIPSRLGLILDM
SPRALEKVIYFVSYIVIDPGETPLSEKQLLNESEYREAYSKYGNSFKAEMGAEAVRKLLT
KIDINNEVKMLKKEVKESTGQRRKRAIRRLEVLDGLNNSSIYPSWLVLNVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPEIIIRNEKRMLQEAVDALIDNGR
RGRPVTGAGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLQLHQCGLPKK
MALELFKPFVMKGLVDKGLAHNIKNAKRMVENVNDEVWGVLEEVIQDHPVLLNRAPTLHR
LGIQAFEPILVEGKAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQTEARLLMLSTTNLL
TPSDGHPITVPTQDMVLGIYYLTTVTEGAVGEGKEFSSASEAIKAYDTGKVNLQANVKVR
LDGKIIETSIGRVIFNEALPAEMEYINEQIGKSGLGEMISDLQERFGNTKTARALDNIKA
LGYDFATRSGISIAVSDAAIPASKEDILNRAEEEVHNIEQHYRRGAITDNERYQKVVDIW
NKAKDDVTNALIAHLEKDNNISVMADSGARGNRSQISQLAGMRGLMADPSGRILDVPIRS
SFREGLNVMEFFISTHGARKGLADTAIRTADSGYLTRRLVDVSQDVIIREDDCGTEQSTL
VESIGGKGKEAIETLAERCIGRTAAEDIIHPITGEFIVERNEVITRDSMKEIDQAGIEAV
KIRSVLNCESKHGVCRKCYGRNLATGKLVDIGESIGIIAAQSIGEPGTQLTMRTFHTGGV
AGDDITQGLPRVEELFEGRTPKGQAIITEKTGYVKIISKKNSRRIVIEDDDGKKKTYQIP
YGSQISVKDGQMVYAGDKLTEGPMDPSVLLKVKGESEVQNYLLEEVQNVYRSQGVEINDK
HIEVIIRQMMRKLKIIKPGDTDFLPGSLVNRYEVREVNRKIAENGGQTATYKSELLGITK
ASLATDSFLSAASFQETTRVLTEASLEGKVDSLMGLKENVIIGQLIPAGTGMRRYRSIDM
LDENELPMENLIDEIVEEAE
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
ttgttcaacgttaataattttgattcaatgaaaattagtgttgcctctccagaacagatt
cgcgactggtcaaggggggaagttaaaaaacccgaaactataaattatagaacattaaaa
ccggaaaaggatgggcttttctgtgaaaagatattcggcccgaccaaggattatgagtgt
cattgtggtaaatataaaagggtgaggtataaaggagttgtctgtgaccgctgtggtgta
gaagtaacccgttccaaggtccgccgtgaacgcatgggtcatattgaattagcggctccg
tgtacccatatatggtattttaaaggcattcctagtcgcttgggtttaatacttgacatg
tcaccaagggcattggaaaaggttatttattttgtctcctatattgtaatagacccaggg
gaaaccccattaagtgagaaacagttactaaatgagagtgaatatagagaggcatacagt
aaatatggtaatagtttcaaagctgagatgggggcagaagcagtacggaaattacttact
aaaatagatataaataatgaggttaagatgcttaaaaaggaggttaaggaatcaactggg
cagcgccgcaaaagggccatcaggagattagaggttcttgatgggttaaataattcatca
atttatccctcttggttggtcttaaatgttatcccggtaattccccctgaccttagacct
atggtccagcttgatgggggtaggtttgcaacctctgatttgaatgacttatacaggcgt
gttattaaccgtaataatagattgaagagattacttgatctgggagcacctgaaattatt
attagaaatgaaaagagaatgctgcaggaagcagttgatgccttgattgataatggtagg
aggggtagaccggttacaggtgccgggaaccgtccgctcaaatcactaagtgatatgttg
aaaggtaaacagggccgtttccgtcagaacctgctcggtaaaagggtagattattcaggg
agatctgttattgtagtaggaccggatttgcaactccatcagtgtggtctacctaaaaag
atggctttagagctttttaaaccatttgtcatgaaaggcctggttgataaaggcttagca
cataatataaagaatgccaagcggatggttgagaatgtaaatgatgaggtgtggggtgta
ctggaagaggttattcaggaccatcctgtcttactgaacagggctcctactttacataga
ctcggcattcaagcctttgagccgatactggttgaaggtaaggccattaaactacatccc
ctggtctgtactgcctataacgctgattttgatggtgatcagatggcggttcatgttcct
ttatctgctgaagcccagacagaggccaggttattaatgttatcaactaccaatctattg
acaccatctgatggacatccaatcacagtccctacccaggatatggttctgggtatatat
tacctgacaactgttacagagggagcagttggggaaggtaaagagttttcctctgcctcc
gaggcgattaaggcctatgatacaggtaaggttaatctacaggccaatgttaaggttagg
ttagatgggaaaataatcgagacgtcaatcggtcgggttatttttaatgaggccctaccg
gcagaaatggaatatataaatgaacagattggtaaaagtggacttggcgagatgatctct
gacctgcaggagaggtttggaaataccaaaacagcccgtgctctggataatattaaggcc
ttaggctatgattttgctactcgttcagggatatcgattgctgtaagtgatgctgctatc
cctgccagtaaagaagatatattaaatagggctgaagaagaggttcataatatagagcag
cactaccgcagaggggctattactgataatgaaagataccaaaaagtagtagacatctgg
aataaggctaaagatgatgtgacaaatgctttaattgctcatctagaaaaagacaataat
atttctgtcatggctgattctggtgcccgtggtaatagatcgcagatatcacagctggct
ggtatgcgtgggttaatggcagatccttcaggtcggatacttgatgttcctattcgctca
agtttccgggaaggattaaatgttatggagtttttcatatcaacccatggtgccagaaag
ggtctggctgatacagctatcaggacagctgattccggttatttaaccagacgtctggtt
gatgtttcgcaggatgtgattatcagggaagatgactgtggaacagagcagagcactttg
gtagagtctattggcggcaagggtaaagaggctattgagaccctggctgaaagatgtatt
ggtagaactgccgctgaagatattattcatcccataacaggagagtttattgtagaaaga
aatgaagtaattacacgtgacagtatgaaagaaattgatcaggcaggtattgaagcagta
aaaatcaggtctgtcttaaactgtgaaagcaaacatggggtttgccgcaagtgttatggt
agaaacctggctactggtaaattagttgatattggtgaatcaattggaataatagcagct
cagtcaattggtgaaccggggacacagctcaccatgcgtaccttccatactggaggtgtt
gctggggatgatatcacccagggtctacccagggtagaagagttgtttgaaggtaggaca
cctaagggtcaggcgattattactgaaaaaactggttatgttaaaataatcagtaagaaa
aatagccgccggattgttattgaagatgatgacggtaagaaaaaaacctatcagattcca
tatggttctcagataagcgtaaaagatgggcagatggtctatgcaggtgataaattgact
gaagggcctatggatcctagtgttttattaaaggttaaaggagagagtgaggtacaaaat
tatctcctggaagaggttcaaaatgtttaccgttcacagggtgttgagataaatgataaa
catattgaggttattattagacagatgatgaggaagcttaagattattaaaccaggggat
acagattttctgcctggaagtctggtaaataggtatgaggtaagagaagttaatcgtaag
atagctgaaaatggtggtcagaccgccacatataagtcggaattgcttggtattactaag
gcttcactggcaacagatagttttctatctgctgcttccttccaggaaacaacaagggtc
ttaacagaagcctcgctggaaggtaaggttgattcattaatgggattaaaggaaaatgtt
attattgggcagttaataccggcaggtactggtatgaggcgttaccgttctattgatatg
cttgatgagaatgagctgcctatggaaaatttaatagatgagattgttgaagaagcagag
tga
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