Ictalurus furcatus (blue catfish): 128613675
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Entry
128613675 CDS
T09387
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu04510
Focal adhesion
ifu04512
ECM-receptor interaction
ifu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
128613675 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
128613675 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
128613675 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ifu00535
]
128613675 (col9a1a)
Proteoglycans [BR:
ifu00535
]
Extracellular matrix (ECM) proteoglycans
Others
128613675 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
128613675
NCBI-ProteinID:
XP_053490669
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All DBs
Position
10:6717610..6733436
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AA seq
680 aa
AA seq
DB search
MAYARASLLVILLQIFLICSAQRGPPGPRGLPGSPGFPGINGIDGERGPGPGPDGPPGQD
GDDGKNGSNGLPGTPGADGITGPVGEAGPVGPIGPKGEPGDPGPRGKPGVGEDGEAGADG
EDGLPGELGKAGPPGSRGVRGAVGLPGPAGPRGPPGVWNGEELCPTSCTRGLTGYSGLPG
MKGHKGIKGESGEPGRQGHKGEEGEQGASGEPGAQGKPGTQGLRGITGLMGPKGDRGPRG
IDGNVGPQGVQGASGDQGQRGKMGETGPSGAQGPPGLRGSVGLIGPKGEAGLPAIDAREG
IPGLPGSKGIPGKVGPPGEAGLQGLPGLPGMPGPKGESGKKGETGDPGVAGPIGNSGKQG
ERGEKGEVGPVGPRGGTGERGMRGPDGPQGQPGPRGPIGDLGLPGLPGAPGFRGQNGDRG
AVGLTGPKGEQGAPGEEGAPGEKGDVGDEGEPGEKGSLGKPGDSGNKGPEGVRGQQGPEG
EPGLSGPRGMQGEQGERGLPGPQGRPGRGPTDRHIKQVCMRVMQERLAQLAASLTRPLYG
ITGSQGPPGLPGPPGSPGEHGFPGHAGARGLPGLKGPPGRIGLKGPKGDTGDRGDRGPTE
QGPKGIPGPPGLPGEAGQPAYGNDGRDGMRGPPGVPGMPGIPGPPGPPGLNGYCEQSQCA
LPEPPPQPLKDSGMKGPDRL
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacgccagggcttccttactggtgattttactgcaaatattcctcatctgttca
gctcagaggggcccgcctggtcccagggggctacctggctctccaggttttcctggcatc
aatggcatcgatggagagaggggtccaggccccggtccggatggtcccccgggccaagac
ggagacgatgggaaaaacggttctaatggactaccaggaactccaggagcagacggtatc
actgggcctgttggagaagctggcccagttgggcccatcggaccaaaaggtgaacccggc
gatcctggacctagagggaaacctggggtcggcgaggatggagaagctggtgcagatgga
gaggatggattgccaggagaattgggcaaagctggacctccagggagccgtggagtaaga
ggggccgttggccttcctggaccggcaggaccgagaggcccccctggtgtttggaacggt
gaagaattgtgtccaacttcctgcacacggggactgaccggctatagcggacttccagga
atgaagggccacaaaggtatcaaaggtgaatctggagaaccaggaagacaaggacataag
ggtgaagagggagaacaaggcgcctctggagaacctggcgcacaaggaaaacctggaaca
cagggactaagagggatcactggtttgatgggtcctaaaggtgacaggggccctcgtggg
atcgatggtaacgtgggtcctcagggcgttcaaggagcttctggtgatcaagggcaaaga
ggaaaaatgggtgagactggaccaagtggagctcaagggcctccgggacttcgaggcagt
gtaggtttgattggacctaaaggagaagctggtttgccagcaatagatgctcgtgagggt
atcccaggattgccaggcagcaagggtatccctggcaaagtaggtcctcctggtgaagct
ggccttcaagggctgcctggtttgccaggcatgccaggtccaaagggtgagagtggcaag
aagggggaaactggtgatccaggtgtggcaggaccaattgggaacagcggaaagcaaggc
gaacgtggtgaaaagggagaagtaggaccagtaggaccaagaggtgggacaggtgagaga
gggatgaggggtccagatgggcctcaagggcagccaggtccaaggggacctataggggat
ctcggtctacctggcctaccaggtgcacctggttttcgtggtcagaatggcgacaggggt
gcagtcggtctcactggtccaaaaggcgagcagggagcacctggtgaagagggcgctcca
ggagaaaaaggggacgtaggtgatgaaggggaaccaggcgagaaaggttcgctgggaaaa
ccgggcgattcaggaaacaaaggtccagagggagtgcgtggacagcagggacctgaaggt
gaaccaggtctgtcaggacccagaggcatgcagggagagcaaggagagcgtggattacct
ggcccacaaggacgaccgggtcgaggacccacagaccgacacatcaagcaggtctgcatg
agggttatgcaagagcggctcgctcagcttgcagcgagtctgacgcggccactgtacggc
attaccgggtcgcaaggtcctcccggccttcccggaccccccggctcgcctggagagcac
ggcttcccgggacacgctggagccagagggttgccaggtcttaaaggacctcctggacgt
attggactgaaaggacctaaaggtgacacgggagaccgaggagacaggggacctacagaa
caagggccgaaaggcattcctgggccaccaggtcttccaggtgaggccgggcagcccgca
tatggcaacgacgggcgcgatggtatgagagggcctcctggtgtacccggaatgcccggc
attccaggacctcccggtccacctggtcttaacggatactgcgagcaatcacagtgtgca
ttaccagaacctccacctcaacctctcaaagattctggcatgaagggaccagacagactt
taa
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