Ictalurus furcatus (blue catfish): 128616126
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Entry
128616126 CDS
T09387
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b
KO
K04834
voltage-gated sodium channel type II alpha
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ifu04040
]
128616126 (scn1lab)
Ion channels [BR:
ifu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
128616126 (scn1lab)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
Zip
IQ
RhlB
Lustrin_cystein
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
128616126
NCBI-ProteinID:
XP_053494618
LinkDB
All DBs
Position
12:complement(9922663..9978014)
Genome browser
AA seq
2007 aa
AA seq
DB search
MAAQLLVPPGPDSFQPFLPESLAAIEQRIAEEAAQRSKGERRTDEDDENGPKPNSDLEAG
KSLPFIYGDIPPGLVSVPLEDLDPYYSNQTTFIVLNRGKAIFRFNATPALYILSPFNPIR
RLSIKVLVHSMFSLVIMCTILTNCAFMTLSNPPDWAKNVEYTFTGIYTFESLIKILARGF
CVGKFTFLRDPWNWLDFSVIVMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVG
ALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRVPQWNDTQNSTENNLTTML
NISTGFELLNTTNAFNWTEYINDKNNYYYLPNRRDALLCGNGSDAGQCPEGFSCIKAGRN
PDYGYTSFDTFSWAFLSLFRLMTQDFWENLYQQTLRAAGKPYMVFFVLVIFLGSFYLVNL
ILAVVAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATESGEYSGRGGL
SEESSSGGSRLSSKSAKERRNRRKKRKQREEEEEKADQEKFHKSESEDSIRRSGFRFSMD
ANRLSYEKKCSTPNQSLLSIRGSIFSPRRNSRASLFSFRGRARDFGSENDFADDEHSTFE
DSDSRRGSLFVPRRIERRNSTVSQCSLAAPRIMLPANGKMHCTVDCNGVVSLVGGASVPT
SPIGRLLPEGTTTESEARKKRSGSHQASDYLDDAAARKRAMSVASILTNTMEELEESRQK
CPPCWYKFANSFLIWDCYPQWLKVKELVNMVVMDPFVDLAITICIVLNTLFMAMEHYPMT
KEFNNVLSVGNLVFTGIFTAEMCLKVIALDPYYYFQEGWNIFDGIIVSLSLMELGLANVE
GLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFG
KSYRDSVCKIAESCALPRWHMVDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIVFM
MVMVIGNLVVLNLFLALLLSSFSADNLASTDDDSEMNNLQIAVGRIQKGIAFVKSALRQF
LQSLFLAGTKPGALDEEKPLDDLHSDGKENCLSNHAPMAVDLGKDFLKEGCVSPSNGVES
HGKYGIEEGDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFSSESSDVEGSKEKLPVDTV
LSSSEGSTVDIRPPGEGAESVEIEPEESLDPEDCFTEGCMMRFQCCQVDVEKGRWRSWWT
LRKTCFIIVEHNWFESFIIFMILLSSGALAFEDIYIEQRKTVKTVLEYSDKVFTYVFILE
MLLKWVAYGFVKYFTNAWCWLDFLIVDVSLISLVATALGYSELSAIKSLRTLRALRPLRA
LSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYHCVNSTTDEMLP
ISVVNNMSECMALVNESTRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRDLE
EQPDYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYY
NAMKKLGSKKPQKPIPRPTNQLQGLVFDLITKQAFDIIIMILICLNMVTMMVETDDQTQD
MDNILYWINLVFIVLFTGECVLKMFSLRHYYFTIGWNVFDFVVVILSIVGMFLSEVIEKY
FVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFG
MSNFAYVKHEAGIDDMFNFETFGNSMLCLFQITTSAGWDGLLAPILNKREPDCDSETEHP
GNSYRGDCGNPSVGIFFFVSYIIICFLIVVNMYIAVILENFSVATEESAEPLSEDDFEMF
YEVWERFDPNATQFVEYDKLSDFADVLDPPLRIPKPNKIQLIAMDLPMVSGDRIHCLDIL
FAFTLRVLGEEGEMDALRGQMEERFMASNPSKVSYEPITTTLRRKQEEMSAIIIQRAFRH
YRMRVTIKKASDMYRQRLQDNGESLPVKEVLMIGKFPENSASDKTDMTPSSASPPSYNSV
AKSEKDKYEKERREKENSTKDTRERKK
NT seq
6024 nt
NT seq
+upstream
nt +downstream
nt
atggctgcccagctgctcgttcctcccggacctgacagcttccagcccttccttccagaa
tcactcgctgccattgagcagcgcattgctgaggaggcggcccaacggtccaaaggcgag
aggcgcactgatgaagatgacgagaacggacccaagcccaacagtgacctggaggcaggg
aaatccctgcccttcatctacggggacatccctcctggactggtgtccgtacccctggag
gacctggacccctactacagcaaccagacaacctttatagtattgaatcgtgggaaggcg
atattccgtttcaatgccacgcctgccctctacatcctaagtccgttcaaccctataagg
agactctccattaaagtgctggtgcattcaatgttcagtttagtgatcatgtgcaccatt
ctgaccaactgcgccttcatgacgcttagcaacccaccagactgggccaagaatgtggag
tacacattcacagggatttacacatttgagtctctgattaagatcctggcccgtggcttc
tgtgtgggaaaattcacattcctgcgagacccctggaactggctggacttcagcgtcatc
gtcatggcatatgtaactgaatttgtggatctgggcaatgtctctgcactgagaaccttc
agggttctgcgagcactcaaaactatttcagtgatcccaggcctgaagaccatcgtgggt
gctttgatccagtcagtaaagaagctgtcggacgtgatgatcctgaccgtcttctgccta
agtgtgtttgcgctaatcggcctgcagctgttcatgggaaacctgcggcagaagtgtgtg
agggtaccgcagtggaacgacacgcagaactctaccgagaacaacctaacaacaatgctc
aacatcagcacaggcttcgagctgctcaacaccaccaacgctttcaactggaccgagtac
atcaacgacaagaataattattactatcttcccaaccgcagagatgccttgctgtgtggg
aatggcagtgatgcagggcagtgtcctgaaggattttcgtgcataaaggcggggcgtaac
cctgattacggctacacgagcttcgacacgttcagctgggccttcctctccctcttccgt
ctcatgacacaggacttctgggaaaatctctatcagcagaccctgcgtgccgctggaaag
ccctacatggtgttctttgtgctggtgatcttcctgggatcgttctacctggtgaacttg
atcctggctgtggtggccatggcatatgatgaacagaaccaggccaccatcgaggaggca
cagcagaaagaggaggagtttcaggccatgctggagcagctgaagagacagcaggaggag
gcgcaggttgccgcggcagcagcgacagagagtggggagtatagcggcaggggcggcctg
tctgaggaaagctcctccgggggctccagactctcctcgaagagcgccaaggagcgacgg
aacaggcgcaagaagaggaaacagagagaggaggaggaggagaaagccgaccaggagaag
ttccacaagtccgagtcagaagacagcatccgccgctcgggctttcgcttctccatggac
gccaacaggctgtcctatgagaagaagtgctccaccccgaatcagtctctcctcagtata
cgtggttcgatcttctctccgagaaggaacagccgggcgagtttgtttagttttcgaggc
cgagcccgggacttcggctcggagaacgattttgcggatgatgagcacagcacgtttgag
gacagcgacagccgtcgaggctcgctctttgtacctcggcggatcgagaggaggaactcg
acggtcagtcagtgtagccttgccgctccacggatcatgcttccggccaatgggaagatg
cattgcactgtcgactgtaatggagtggtgtcgttggtgggcggagcctctgtgccaact
tcaccgattggccggttgcttcctgagggcacgacaacagagtcagaggctcgtaagaag
cggtctgggtcacaccaggcctctgattacctggatgacgctgcagctcggaaaagagct
atgagcgtagccagtattctcacaaacactatggaggagctggaggagtcgagacagaag
tgccccccctgctggtacaaatttgccaacagcttcctaatctgggactgctacccccag
tggctgaaagtgaaggagctcgtcaacatggtggttatggacccattcgtcgacctggca
atcaccatctgcatcgtcctcaacaccctgttcatggccatggagcattaccccatgacc
aaggagttcaacaacgtgctctcggtcggaaatctggtattcacagggatcttcacagct
gagatgtgtttaaaggtcattgccctggacccctactactacttccaggagggttggaac
atctttgatggcatcatcgtgagtttaagcctgatggagctgggactggctaatgtggag
gggctctctgtgctcaggtctttccgattgctgcgagtgttcaagctggccaagtcatgg
cccactctgaacatgctgatcaagatcattgggaactcggtgggcgccctgggcaacctg
accttagtcctggccatcatcgtcttcatattcgccgtggtgggcatgcagctgttcgga
aagagctaccgcgacagcgtgtgcaaaattgcggaaagctgcgctcttccacgctggcac
atggtggacttcttccactcgttcctgatcgtgttccgagtgttgtgtggcgagtggatc
gagacaatgtgggactgcatggaagtggccggccagagcatgtgcctcatcgtcttcatg
atggtcatggtgattggaaacttggtggtgttgaacctcttcctggccttgctgctgagc
tccttcagcgccgacaacctggcctcgacggatgacgacagcgagatgaacaacctgcag
atcgccgtgggtcgcatccagaagggcattgcctttgtgaagtcagcgctgaggcagttc
ctacagagcctcttcctggccgggaccaaacccggcgccctggacgaggagaagcccctg
gatgacctgcacagcgacggcaaggagaactgcctctccaaccacgcccccatggccgtc
gacctcggtaaggactttctcaaggaaggatgtgtgtcgcctagcaacggggtggaaagc
cacgggaagtatggcatcgaggaaggggactacatgtcatttatccacaaccccagcctc
acggtcacggtgcccattgccgtgggcgagtcagacttcgagaacctcaacacggaggat
ttcagcagcgagtcgtccgacgtggagggaagcaaagagaagcttcctgtggacacagtt
ctgagttcttccgagggaagcacagtggacatcagacccccaggagagggggccgaatcg
gtagagatagaaccagaagagtcactggaccccgaggactgctttactgaaggctgcatg
atgaggtttcagtgctgtcaggtggacgtggagaagggacgctggaggagctggtggact
ctcaggaaaacctgctttatcattgtcgagcacaactggtttgagtccttcatcattttc
atgatcctgctgagcagtggtgctctggcttttgaggatatctacatagagcagcggaag
acggtcaagacagtgctggaatactcggataaagttttcacttacgtcttcatcttggag
atgttgctgaaatgggtggcttacggcttcgtcaaatatttcaccaacgcctggtgctgg
ctcgacttcctcatcgtagatgtgtctctgatcagccttgttgctactgctctgggttac
tctgagctgagtgccattaaatcactgaggactctacgtgctctgagaccgctaagagca
ttgtcacgcttcgagggcatgagggtcgtagtgaacgctctgctcggcgccatcccctcc
atcatgaatgtgctgcttgtgtgtctgatcttctggctcatcttcagcatcatgggcgtc
aacctgttcgccgggaagtactaccattgcgtcaacagcaccacggacgagatgttaccc
atcagcgtggtgaacaacatgtccgagtgcatggcgctggtcaacgagagcacgcgctgg
aaaaacgtcaagatcaacttcgacaacgtgggagccggatacctggccctactacaagtg
gccacttttaaaggctggatggacatcatgtacgccgcagtagactctcgcgatctggag
gaacaaccagactatgaagtgaacctgtacatgtacctgtacttcgtcatcttcatcatc
tttggctccttcttcacactcaacctcttcattggtgtcatcatcgataacttcaaccaa
cagaagaaaaagttcggaggtcaggatattttcatgacagaagagcagaaaaagtactac
aacgccatgaagaagctcggctcgaagaaaccgcagaaacccatccccagacctacaaac
caacttcagggccttgtctttgacctgatcaccaagcaagccttcgacatcatcatcatg
atcctgatctgcctgaacatggtgaccatgatggtggaaactgatgaccagacgcaagac
atggataacatcctgtactggatcaacctggtcttcatcgtgctcttcaccggcgagtgt
gtgctgaagatgttctcgctgagacactactacttcacgatcggctggaatgtgtttgac
tttgtggttgtgattctgtccatcgtcggaatgttcctctcagaggtgatcgagaagtat
tttgtgtcgcccaccttattccgagtcatccggctggctaggatcggccgtatcctccgt
ctcatcaagggggccaagggtatccgcaccctcttgttcgccttaatgatgtcacttcct
gccttgttcaacatcgggctcctgctcttcctggtcatgttcatctatgccatttttggc
atgtccaactttgcctatgtcaaacacgaagccggaattgatgacatgttcaactttgag
acgtttggaaactccatgctgtgcctattccagatcacaacctccgccggctgggacggg
cttctggcgcccatcctgaacaagcgtgaacctgactgcgacagtgagactgagcaccca
ggcaactcataccgcggcgactgcggcaacccatcagtgggaatcttcttcttcgtcagc
tacatcatcatctgcttcctgattgtggtcaacatgtacatcgctgtcatcctggagaac
tttagcgttgctacggaggaaagcgccgaaccgttaagtgaggacgactttgagatgttc
tacgaggtgtgggagcgctttgacccgaacgctacgcagtttgttgagtatgacaagctg
tcagactttgcagatgtcctggacccaccgttgcgcatccctaagcccaacaagatccag
ctgatcgcgatggacctgccgatggtcagtggagaccggatccactgcttggacatcctg
tttgcctttacactgcgtgtgctgggtgaggagggtgagatggacgcgttgcggggacag
atggaggagcgcttcatggcttccaatccatccaaagtgtcctatgagcccatcaccacc
accctgcggcgcaagcaggaggaaatgtcagccatcatcatccagcgagccttccgacac
taccgcatgcgcgtcacgatcaagaaggcgtcagacatgtaccgccagcgactgcaggat
aatggcgaatctctgcctgttaaagaggttctcatgatcgggaagtttccagagaactcg
gcatcagacaaaacggacatgaccccgtcttcggcttcaccgccctcgtacaacagcgtg
gccaagtcagagaaggacaaatatgagaaggaaaggcgggagaaggagaacagtacaaaa
gacacacgcgagagaaagaaatga
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integrated database retrieval system
