Ictalurus furcatus (blue catfish): 128625560
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Entry
128625560 CDS
T09387
Symbol
skic3
Name
(RefSeq) SKI3 subunit of superkiller complex protein
KO
K12600
superkiller protein 3
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128625560 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ifu03019
]
128625560 (skic3)
Messenger RNA biogenesis [BR:
ifu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
128625560 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_17
TPR_14
TPR_11
TPR_8
TPR_16
TPR_CcmH_CycH
TPR_12
TPR_9
ANAPC3
PPTA
ARM_TT21_C
COG4_N
HAT_PRP39_N
DUF7017
Motif
Other DBs
NCBI-GeneID:
128625560
NCBI-ProteinID:
XP_053509957
LinkDB
All DBs
Position
22:7466975..7497455
Genome browser
AA seq
1615 aa
AA seq
DB search
MGAMFPSVMQSVHKSEKHNNRGRRWLMTESWCGACAVCSCARKQLCTVTMSSKEVKSALK
SARDAIKNKEFKEALKHCKAVLKLDKNNYNAWVFIGVAASELEQPEQAQTAYRKAAELEP
EQLLAWQGLANLYEKSDQADFKAELPKIYQKLITLYETSDKVKCFDLSKKLVDIYQTEKN
YLQVARVWRHLIQVREAEDGIETFELIELWREMIRLLLGSVEQQDNETQQHLLSAFEKAL
QLTEHVPSEDHKQLTQDYIKCLSKLPHEVVKMKEMCDLMLSHYPKDSYPLEVLGKHYLLL
DDCSEEAVSCYTRLLELDPVSSLAHFGLGKKALQDKKYEDAIKSFGLGLQRMRSSVIGWY
SLAQAELKMHKYSDSVLSSSQGLKGCAGFSEDWTQKLIRVKLEALVRAGTEQSADEALGI
LSQMPDASNDPALLVLKGRAYLQNGKLEEAFQVSSELLSSHPGSVEGLTIKGLTHRAKKE
HQQAEQCFIEAVSQRPDSGELYFLLGQLYWDMGEETRRDRSKVHTHLLKAAKLDSHRGSV
FRYLGHYYRGVAKDQGRARGCYKKAFELDSTDAEAGAATVDLSMEQGDMDSALVVLQAVT
EIATPGSAKWAWMRRGLYHLKVGQHAQATADLQAALRADPQDWVCWECLGEAYRNRHSFT
AALKAFAKAHMLQPSSIYSLYQMASIKQILGRFKEAAVEYQQIIETEEYVPALKGLGECL
LAMAKTAMEDYLDGRAVDLIQEAITYLFRAVQKRADLSCLWKLLGDACTKCSSVSPNRIC
VLVPGVLCGTEPSDKNHTLDQKQLLSLGERCYGRALKLMAEAPGLWCDLGLNYYHQSRLF
LSTSTEPNVQPLLEKALQCVKKAVMLDSGNHTYWSALGVVAMTKGIENFALAQHSFIKSI
RAEPNNVVAWTNLGTLYLKNLNIELAHEAFKIAQSLEPLYVNCWIGQAFIAETVGSYDTM
DLFRHTTELSTHTAGVKGYAYWVCSTLLDKSNRDSELYRYNIVQMNAVSAAQVALTKYTE
RIQTDAEAFVMLGFLNEHMKLKKQAAGAYKRAVALLQNSSQTEELGFALRGYARALCDTD
QWEEAVRHYSSTSLEELHDLTGMALAWFRAGRLQESVNAYEKALAVASTEKEKAYILTAL
ALLQHRLGNMDTAKTLLFKCSLLKEPVPESLLCLCALGLVHGDATLASAALSELMKLDGA
LRGAVEEHCLLTCTLLALQGNYNAVQREASRAVFRNPGNPSLWALLSRLVPQYCPSKADG
GAVAGSVACHASMTLGKRALLYSGVNQLASGRHSGEDRRKNALKTTQRAVLLCPDDPAGW
AGLMAACHTENVACALSGSSPCKEGLERVFMTLVSEKVKSLQREDGLLAQALEGWVLQQT
VTGLKQSGLYDEAEALCSQVLSVSPEHPAVFLLLRQVQCECLLLSDAGDCIPPTVLDQLS
AAVMANPTSVSAWHWLAEVYRSQGLLAQASVALRQSLQLTSQLGHYSGKLSSLLRLALLS
LTPCMAGVGGAEWSSLVREACTEVLKLGPCPVASLFQALLQFSIKMGARETRRLLEKIVY
GPSSRDVKTVAAVARWYLLRHLHAKDDLQLIDTLMMEAEAAGDLRLLEFHKQLFP
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcaatgtttccatctgtgatgcagtcagtacataagtcagaaaagcacaacaac
agaggtcgtcgctggttgatgacggaatcatggtgtggcgcatgcgcagtctgcagttgt
gcacggaagcagctgtgcactgtgacaatgtcaagtaaagaagtcaaatcggctctaaaa
agtgccagagacgctatcaaaaacaaggagtttaaagaagctctgaaacactgcaaggct
gttctgaagcttgacaagaataactacaatgcttgggtgtttattggagttgcagcgagc
gagctggagcagcctgagcaggcacagacagcctacaggaaagctgcagagctcgaacct
gagcagctgcttgcatggcagggccttgcaaacctgtatgaaaaaagcgatcaagcagac
ttcaaagccgagctgcccaaaatctatcaaaaactcataacgttatatgaaacttcagat
aaagtcaaatgttttgacttgagcaagaagttggtggacatctatcagacagaaaagaac
tacttacaggtggcgagggtttggcggcacctcattcaggtgagagaggcagaggatggg
attgagaccttcgagctgattgagctatggagagaaatgatcaggctgctcctgggctca
gtggaacagcaggacaacgagacacagcaacatctcctgtctgcttttgaaaaagctctt
cagctaacagaacatgtgcctagtgaggaccataaacaactcacccaagattacattaaa
tgcctgtcaaaactccctcatgaagtggtgaagatgaaggagatgtgtgatctcatgctg
tcccactacccaaaagactcgtatcctctggaagttctagggaagcattatttactttta
gatgattgcagtgaagaagctgttagctgttacactcgtctcttggagctggacccggtc
agttcactggcccactttggtctgggtaaaaaagctctccaggacaagaaatatgaggat
gctatcaagagctttggtcttggactgcaacggatgcgctccagtgtcattggatggtac
agtctcgctcaggctgagctgaaaatgcacaaatactctgatagtgtgctgtcctccagc
caagggctgaaggggtgtgcaggatttagtgaagactggacccagaagctgatcagagta
aagctggaggcgctggtgagagctggaacagagcagagtgcagatgaagctctggggatc
ctttctcagatgccagacgctagcaacgatcctgctctgttagtgttgaagggtagagcc
tatttacagaacgggaagcttgaagaagcctttcaggtgtcttctgagttgctgagctcg
catcctggctctgtggaagggttaaccataaagggactgacacatagagctaaaaaggaa
caccagcaggcagagcaatgttttattgaagctgtgtctcagaggccagacagtggggag
ttgtatttcctactagggcagctttattgggacatgggggaagagacccggagggacagg
agcaaagttcacactcatctgctgaaggctgccaagctggattcccatcgtggctctgtg
ttccgctacctgggtcactactataggggggtggccaaagaccagggccgagctagaggc
tgctacaagaaagcatttgagctggactccactgatgcagaggctggagcggcaactgta
gacctcagcatggagcagggagacatggactctgctttagtagttcttcaggcagtgaca
gagatagcaactcctggttcagctaaatgggcctggatgagaagaggcctgtatcatctt
aaagtgggacagcatgcgcaggctaccgcagacctgcaggcagcgttgcgggctgaccct
caagactgggtgtgttgggagtgtttaggtgaggcctaccgcaaccgccacagctttaca
gctgctctcaaagcttttgctaaagcccacatgctgcagcccagctccatctacagcctc
taccagatggcctccatcaagcagattctgggcaggttcaaagaggcggcagtggagtac
cagcagataatagaaaccgaagagtacgtgccagctctgaagggacttggagaatgtctt
ttggccatggctaaaacagcaatggaggactacctggatgggagagcagtagaccttata
caggaagccattacgtatttgttcagggcagtgcagaagcgtgcggatctctcatgtctg
tggaagttgctgggagatgcctgtacaaaatgcagttctgtttctccaaaccgaatctgt
gtgctggtgcctggtgtactgtgtggaacagagccttcagataagaaccacacactggac
cagaaacagctgctcagtcttggggagagatgctacggccgtgctctgaaactgatggca
gaagccccgggcctgtggtgtgacctgggcctcaactattaccaccagtcgagactgttc
ctgtccacatctacagaaccgaacgtccagccactgttggagaaagccctgcagtgtgtt
aaaaaggcagtcatgctggacagtgggaatcacacgtactggagtgcactgggggtcgtg
gctatgactaaaggaattgaaaactttgcccttgcacagcacagtttcatcaaatcaatc
agagcagagccgaacaatgttgtagcatggacaaaccttggaacgttgtacctcaagaac
ctgaacatcgagcttgcacacgaggccttcaagattgcgcaatctctggagccactgtat
gtgaactgttggatcggacaggcgttcattgctgagacagtaggaagctatgacactatg
gatctcttcagacacaccactgagctcagcactcatactgcaggagtgaagggttatgcg
tactgggtctgttccacgctactggacaagagtaaccgagactcggagttataccgctac
aacatagtccagatgaacgcagtctcggctgcccaggtggccttaaccaaatacacagag
aggattcagacggatgccgaagcttttgtgatgttgggcttcctgaatgaacacatgaag
ctgaaaaagcaggcagctggagcctataagagagctgtggcgctgctccagaacagttca
caaacagaagaactcggctttgctctcagaggctacgctcgggcactctgtgacacagat
cagtgggaagaggctgtccgtcattattcctccacatcactagaggagctgcatgatctc
acaggcatggctctggcctggtttagagctggacgtctccaggagagtgttaatgcctat
gagaaagctcttgcagtggcctccactgagaaggagaaagcctatatactaacagctctg
gctttactacagcaccgattggggaacatggacactgccaaaactttgctctttaagtgc
tcattgctgaaggagccagttccagaaagtttgctgtgtctatgtgctttgggcctggtc
catggagacgccaccctggccagcgctgccctctcggagctgatgaagctggatggagct
ttgaggggtgctgtggaagagcactgcctgctcacttgcaccctgctggccttacagggc
aactacaacgctgtgcagagagaggcttccagggcagtgttcagaaacccaggaaatccg
tccctgtgggcgctgctgtccagactggtgccacagtactgtcccagcaaagctgacggt
ggagccgtagcaggtagcgtggcatgtcatgctagcatgactctaggaaagagggcactg
ctgtacagcggcgtaaatcagttggcctcaggcagacactctggggaagacaggaggaaa
aatgctctaaagaccacccagagagctgtactgctctgtccagacgatcctgcggggtgg
gcggggcttatggctgcatgtcacacagagaatgtagcatgtgccctgtcaggctcctcc
ccctgcaaagaaggtctagagagagtgtttatgacactggtgtcagagaaagtgaaaagc
ctgcagagagaggatgggcttttggctcaggctctggaaggctgggttctgcagcagact
gtgacaggactcaaacagagcggcctgtatgatgaagctgaagccctgtgttcacaggtg
ttgagtgtgtctcctgagcatcctgcagtgttcctgttgctcaggcaggttcagtgcgaa
tgcctcctgctgtctgatgccggagactgcatccccccaacggtgctggaccagctgagt
gctgctgtcatggccaacccaacctcagtgtctgcttggcactggctggcggaggtgtac
cgctctcagggtttgctggcacaggcctcggtggctctgagacagagtctgcagctcacc
tctcagctcggtcactacagcgggaagctcagcagtctgctgcgcctcgccctgctctct
ctcaccccctgcatggctggagttggaggcgcggaatggagcagtcttgtccgtgaagcc
tgtaccgaggtgctgaagctgggtccgtgtcctgtggcttcacttttccaggctctgctt
cagttctccatcaagatgggagccagggagacacggcgtctgttggagaagatcgtttac
ggaccgagttcaagagacgtgaaaactgtagcggcggtggctcgctggtacctcctgcgc
cacctacatgccaaagacgacctgcagctgatagataccctgatgatggaggctgaagca
gcaggagacctcaggctgctagagttccataaacagctgttcccctga
DBGET
integrated database retrieval system
