Ipomoea nil (Japanese morning glory): 109160203
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Entry
109160203 CDS
T04663
Name
(RefSeq) exosome complex component RRP45A-like
KO
K03678
exosome complex component RRP45
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109160203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109160203
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
109160203
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
109160203
NCBI-ProteinID:
XP_019163972
LinkDB
All DBs
Position
Un
AA seq
497 aa
AA seq
DB search
MRGFCNNFQSWTETITLSPYTISLLRFFHHRSPSGILETNMEQRLVNTWRMTVNEKKFIE
TALLSDLRVDGRRPFDYRKLNIKFGREDGSSEVQLGQTHVMGFVSSQLVQPYRDRPNEGS
LAIYTEFSPMADPSFEAGRPGESAIELGRVIDRGLRESRAVDTESLCVVAGKWVWSIRID
LQILDNGGNLVDAANIAALAALSTFRRPDCTLGGEDGQEIILHPPEVREPLPLIIHHMPI
AVTFAFIGKENIVVVDPTHFEEAVMGGRMTATVNANSDVCAIQKAGGDGVMQSVIMQCLR
IASVKAGDITSKIKNAVESYSTERALRKIKRHTPATAAIDIPDPGHGEVSDFSMQTMDIQ
RVKSEDCCVSHSDDMDVETQSSKPDGNNRGVGKYQKFSGRPSSWDPYSTGVNIEELKFTL
TLHGSSALCEKPYETETVHEKPCDTESGQRSADVNPAPLIAVTTGNEIPTNRVKTLKDAI
KPKHKRKKKPATNADAS
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaggggcttttgtaacaatttccagtcttggacagaaaccattaccctaagcccatac
accatctccctcctgcgcttctttcaccatcgatcaccttcaggtattttggagacaaat
atggagcaaagattggttaatacatggcggatgactgtgaatgagaagaagtttatcgaa
actgcattgctttccgacctcagagtcgacggacggcgccctttcgattaccggaagctc
aatatcaagtttggtagagaagatggctcatcagaggtgcagctgggtcaaactcatgtt
atgggttttgtgtcttcacaactagtgcaaccttatcgagacaggccaaacgaggggagc
cttgcaatctatactgagttttctcctatggctgatccttcatttgaggcaggtcgtcct
ggagagtctgctattgagttgggacgcgtaattgatcgcggtctaagggaaagcagagct
gtggacactgaatctctctgtgttgtagctgggaagtgggtttggtctatccgtattgat
ctccaaattttagacaatggagggaatcttgttgatgctgccaacattgcagccttagct
gctctctcaacatttcggaggcctgattgtacacttggaggcgaggatggacaggaaatt
attttgcatccacctgaggttagggaaccacttcccttgatcatacatcatatgcctata
gcggtgaccttcgcatttattggaaaggagaatatagtggtggtagatccaactcatttt
gaagaggctgtaatgggaggaagaatgacagctactgttaatgcaaatagtgatgtctgt
gccattcaaaaggcaggaggagatggtgtgatgcagagtgttataatgcagtgccttcgc
attgcttcagtgaaggctggtgatataacaagcaagataaagaatgctgttgaatcatac
agcacggaaagagctcttagaaaaatcaaaagacacacgcctgctactgccgcaattgat
attcctgaccctggtcatggggaagtcagtgatttttccatgcagacaatggatatacaa
agagtaaaatcagaggattgctgtgtcagtcatagtgatgacatggatgttgaaacacaa
tcttctaagccagatggaaataacaggggagttgggaaatatcagaaattttcaggcaga
ccatcaagttgggatccatattcaacaggtgttaacatagaagaattgaaatttactctt
actttacatggctcttcagctctctgtgagaagccatatgaaactgaaacagtgcatgag
aagccttgtgatacagaatctggacaacgttctgcagatgttaatccagcacctttaata
gctgtgacaactggaaatgaaataccaactaacagagtgaaaactttaaaggatgctata
aagcctaagcacaagcgaaaaaagaagccagccacgaatgctgatgcaagctag
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