Ipomoea nil (Japanese morning glory): 109183311
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Entry
109183311 CDS
T04663
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109183311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ini03019
]
109183311
Messenger RNA biogenesis [BR:
ini03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109183311
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109183311
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
MIF4G
Motif
Other DBs
NCBI-GeneID:
109183311
NCBI-ProteinID:
XP_019188947
LinkDB
All DBs
Position
Un
AA seq
2392 aa
AA seq
DB search
MVQLVSTSSNHIRYLLQNLNHSNSDSVLQELLQCAAYGTEGSVLVLGICFDHLNIYGKDL
KNLQLEPVFASIFKYLLDKPNFSTVFFKSVRGDAICVEFLENLCTALQLTVYEKIGIGHA
LSYVEDVDIKMCGKKFFIIQLGELLSTRMSVDSVKIVQNMLLKSVDLVMNMLSPFLSKDG
ASLLSDKIHEADFSCMNFDLLNEGSEDDFDALLAEMEKEMSMADIMKELGYGSTASVLQC
KEILSLFLPLTEITIARILGMTVYTYSGLEDNHNIFLSFQTALGSSSLSDLPPLSSWNTD
ALIDAINQLAPGLNWGIIIGNLDHEGFYVPNEASFSVLMSMYRRACQDPFPLHAICGSVW
KNAEGQLSFLRYAVLAPPELFTFAHSGRQLAYVDAVKDHKLQPGRANHAWLCLDLLEVFC
QLAESGHASLIRCILEYPLKHCPEVLLLGLAHINTAYNLLQHEISSIVFPTMLKSTLGTR
VILYLWNVNPSILLRGVMDAMEDDPNNINKVLDSCQELKILSPVLNMIPYSFGIRLAALA
SHKEFIDLGKWLSTNLKTYKDNFYEECLKFIKEVLFSVQDDSTNHFPPPNALLNSYLETV
SMFIKVLQSCTGSVSSFHLSEELEKLNLTCMNSNSSLENISADSNDIEASANSYFKLLFT
QQLTIESMIQILGRFKESSEKREKSIFGVMIANLFEEYKFFPKYPENQLKTAAIIFGSLI
KHHLVTHINLKITLKAVLDALQEPADTIMFGFGTLALEQFEDCLIELPEFCHHISQISHL
RVAKPELIQFIEHELARVSMVNSELDEGKNYIPTQFPGSIQSSQSSIEGSTLPLTACGIS
YPEMQVTSHIQLPQREQSTLDTRKLLTLHCQANQALSSIDQAVIVPSSDATCIPELHSTL
SSSAAKTSSLGIGHPAWANSTRGFGAALNIKTLVAAAERRQTPIEAPASEVQDKISFIMN
NLSDENIEVKAKEIVELLKEEHYPWFAQYIVMRRASIEPNYHALYVKLLDKVNLKALFKE
VVRATYENCKVLLQSGLIKSSSEERSLLKNLGSWLGKITIGRDHVLLAREIDPKSLIIEA
YEKGLMIAVIPFTSKILESCQNSLAYQPPNAWTMAILGLLVEIHALPNLKMNLRFDIEVL
FKNLGVDLKDINPTSLLKDRVREFEGNPDFSNKDAGSSQPQFFGDIKLGIVSNLNEGELS
VDVASTSHPGHHSHIVPQYAASLHLPSRTLTDEGKLTALVSDQHILPSAQGLLQVETPLS
VVSQLPIAASNIEEQVIINPKLHDFGLHSHFQSVLPIAMEKTIKDIVMSITMQRSVFTAT
QTTKELVLKDYSMESDETQIRNVSHFMVASLAGSLIHVHFKEPLFVSISSQLRNTLEGID
IANEFLEHAVQLVTNDNLELGCALIEQTAIKKAIQTIDEAINIELASMTHREGHKHIDSY
ICTEQCKGVLPEALRIKSGHLSYSQQRVYEDFVRLPWKNQSIQSSNALSLGPASSNNRIL
SEAYVAGSAQMSTAAIYSSGLFKAGTAAVLNYLDIASEEIDTSSSQLHSASLPPIGMGDG
ASSYNFENDSIVTPFSSVLLRPIKPCNVVKGTGCSIQPQNPTLSSEDLQSSVSEPSLTTG
DALDKYRIILEKLENLVSCGVKETEIQGAIAEVPAIILRCKSQDEAALAVARKVFKGLYE
NASNIGHVSVHLAMLCSICDISKVVVKELTSWVIYSDEEQKFNKDITVHLIQSELLSLAE
YNIHMAELINAERNKSATVFSISLIQTLLKIDSKAVLELQDLVDALGKLAARPGSHESLK
QLVEIAKNPSANVMASSGASCWKEDNFKQSKEKKAAMLPPSGGDKSSFECVEPGPAGFHE
QVSMLFVEWYQICGSPGAKDAASALYVSRLHRSGLLKGDDVSDCFFQKLMEISVLHCLSS
EVISLSLSQASEAKTLSFLAIDLYAKLVYSVVKFYPVDQGTSKISLLSRVLAVTVKFIQR
DSDEKSDSFDPRPYFRLFINWIIDLCSSDPIFDGANFQILSVFASAFHALQPLKVPGFSF
VWLELVTHRCFMPKLLTGNAQNEWPYFHRLLVDLLQFMEPFLRNAGLGEAPVCLLYEGTL
RVLLILLHDFPEFLCDYHFSFCDVIPPICVQMRNMVLSACPRNIKLPNLSVPDVKIDLLP
EIKLSPRILSEVDAALKARQLKNDVDEYLKTRQQGSLFLRELKQTLLLSPSEATRAGTHY
NVPLINSLVLYVGILAVQQLQTRTAASNNNSQVLLVLGNSGPNHSTLVSAAFDIFQTLSM
ELDKEGRYVMLNAIANQLRYPNNHTHYFSLTILYLFANSNQEMIQEQIIRVILERLVAKP
PHPWGLVATFLELTMNKNYNFWERSFTRCSPDIENLLRSALSSVLRITTVAS
NT seq
7179 nt
NT seq
+upstream
nt +downstream
nt
atggtccaacttgtttcgacctcctcgaatcatattcggtatttgcttcagaacttaaac
cattccaactccgactctgtattgcaagagctcctccagtgtgctgcatatggaactgag
gggagcgtattggtgcttggaatctgctttgatcacctgaatatctatgggaaagacttg
aagaatttacagttggaaccagtttttgcttcaatttttaaatacttgttggataaacct
aattttagcacagttttcttcaagtcagtcagaggtgatgctatttgtgtggagtttctg
gagaacctgtgtactgcattacagttgacagtatatgagaaaattggcattggtcatgct
ttgtcatatgtagaagacgttgatatcaaaatgtgtgggaaaaaattcttcatcattcag
cttggggaattattgtcaactcgcatgtctgtggactctgtgaagattgttcagaacatg
cttttgaagagtgtggatttggttatgaacatgctgtctccttttctatcaaaagatgga
gcttcacttctttcagataaaattcatgaagctgacttttcatgcatgaattttgatctt
ttaaatgaaggcagtgaagatgattttgatgctcttctagcagagatggagaaggagatg
agcatggctgatataatgaaggaattgggttatggatccactgcgagtgtcttgcaatgc
aaggaaattttatctcttttcctgccactgacagaaattaccattgcaaggatacttgga
atgactgtttatacatactcaggcctcgaggacaatcacaatatattcttgtcatttcaa
actgctcttggaagtagcagtctatctgatctaccaccactaagttcttggaatactgat
gccctcattgatgctatcaaccagctagctcctggactaaattggggaatcatcatagga
aatctagatcatgagggcttttatgttcctaatgaagcatctttctctgttctcatgtct
atgtatagacgtgcttgtcaggatcctttccctctacacgccatttgtggctctgtctgg
aaaaatgctgagggccagctttcatttcttagatatgctgttttggcgccaccagaattg
tttacttttgctcattctgggaggcaactggcatatgttgatgctgtgaaagatcataag
cttcaacctggacgtgcaaatcatgcttggttgtgtcttgatcttttggaagtgttctgc
caattggctgagagtggtcatgcaagccttattcgatgtattcttgagtacccccttaaa
cactgccctgaagtcctgcttcttggcttggcccacatcaatacggcatataatctcctt
cagcatgaaatctcttctattgttttccctacaatgctaaaaagtacactagggacacgc
gtgattctttatttgtggaatgttaatccaagcattttgttgaggggggttatggatgcc
atggaggatgatcccaacaacattaataaagttttggattcctgccaagaactgaagatt
ctttcaccagtgctgaatatgattccttattcttttggtattagacttgctgcccttgct
tctcacaaagaattcattgatcttgggaaatggttgagtaccaacttaaaaacatataaa
gataatttctatgaggaatgccttaagttcataaaggaggtgctttttagtgttcaagat
gattctactaaccactttcccccacctaatgctcttttgaatagttatttggaaactgtt
tcaatgtttataaaggtccttcaatcatgtacagggtcagtttcatcctttcacttgtct
gaggaattggagaagctgaacctgacttgcatgaattctaactcaagccttgagaatatt
tctgctgattccaatgatattgaagcatcagcaaattcttatttcaagctactgtttact
cagcagctgacaattgagtcaatgattcaaattcttggacgtttcaaagaatcttctgaa
aaaagggaaaagtcaatatttggggttatgattgcaaatctttttgaggaatataaattt
tttcccaagtatccagagaatcagttgaaaacagctgcaattatctttggatcccttatc
aagcatcatcttgtgactcatattaatcttaaaattactctgaaagctgtcttggatgct
ttacaagaacctgcagatacaattatgtttgggtttggaactcttgctctggaacagttt
gaggactgtttgatcgagttgccagaattctgccatcacatatcacaaatatctcatctc
cgtgtagctaagccagagcttattcaattcattgaacatgaacttgcaagggtttccatg
gtgaattctgaattggatgaaggcaaaaattatattcctactcaatttcccgggtccatc
cagtcttcacaatcaagcattgagggctctacacttcctttaactgcatgtggaatctca
tatccggaaatgcaagtgacctcccacattcagcttcctcagagagagcagagtacttta
gacacaaggaaattgttaactcttcattgccaagcgaaccaagccttatcctccatagat
caagctgttattgtcccttcaagtgatgctacttgtattccagagctacatagtacactc
agttcttcagcagcaaaaacttcctcccttggcattggtcatcctgcttgggcaaactca
acaagagggtttggtgctgctttaaatattaaaacactagttgctgctgcagagagaaga
caaacacctatagaggctccagcatcagaggtccaggataaaatatcatttatcatgaat
aacctatcagatgaaaatattgaagttaaagcaaaagagattgtggaacttttaaaagag
gagcactacccctggtttgctcagtatattgtgatgagaagagcaagcattgaaccaaat
tatcatgcattatatgtgaagctcctagataaagtaaatttgaaggcattattcaaggag
gttgtccgagcaacctatgaaaattgcaaggttctgttacaatcaggtcttataaagtca
agttcagaagagcgttcattgctgaaaaatttgggaagctggctaggaaagattaccatt
ggcagggatcatgttttactggctcgtgagattgatcctaagtctttgattatagaggct
tatgaaaaagggttgatgattgcagttattcccttcacctcgaagatattggaatcatgt
caaaacagtctagcataccaacctcctaatgcatggaccatggccattcttggactactt
gttgagattcatgcattgccaaatttaaaaatgaacctcagatttgatattgaggtgctg
ttcaagaaccttggtgtggatttgaaggacataaatccaacttctcttctgaaagaccgg
gttagggaatttgaaggaaatccagatttctcaaacaaggatgctggatcttctcaacca
cagttttttggtgatatcaaattgggaattgtgtccaatctgaatgagggtgaactatca
gttgatgttgcaagtacatcacatcctggtcatcattcacatatagtacctcagtatgct
gcttctctccatcttccatctaggacattgacagatgaagggaagttaacagctctagta
tctgatcagcatatactaccttctgctcaaggtcttctacaagtggaaacaccactttct
gttgttagccagcttccaatagctgcatctaatattgaggagcaagttattatcaatcca
aaactccatgattttggtctgcactcacattttcaaagtgtacttcccattgccatggaa
aaaacaatcaaggacatagtcatgagcattactatgcagcgcagtgtttttactgccact
caaacaacaaaggaacttgtgttgaaggactattccatggaatctgatgagacccagata
cgtaacgtatcacattttatggttgccagtttagccggaagtctaattcatgtgcatttc
aaggaacctttatttgtttccatatcaagtcaacttagaaatacacttgagggaatagac
attgcaaatgagttccttgaacatgctgtacaacttgtgactaatgacaatcttgagctt
ggctgtgcattgattgaacaaactgcaataaagaaggctatacaaactattgatgaagcc
attaatattgagcttgccagtatgacacatagggaggggcacaaacacattgattcatat
atctgtacagaacagtgcaagggagttttacctgaagcccttcgcattaaatctggtcac
ttatcctactctcaacagcgagtttatgaggattttgttcgcttaccttggaaaaatcaa
tcaatccagagctcaaatgctttgtccctaggtcctgcctcatcaaataacaggattctg
tccgaggcttatgtagcaggatctgcacaaatgagcactgctgctatttactcttctggc
ctttttaaggcaggaactgctgctgttctaaattacttggatattgcatcagaagagata
gatactagttcatctcagcttcatagtgcctctttacctccaattgggatgggtgatggt
gctagttcttacaattttgaaaatgacagtatagtgactccattttcttcagtcttattg
cggccaatcaagccatgtaatgttgtaaaggggacagggtgttccatacagccacaaaat
cctacactatcctctgaggatcttcaaagtagtgtttcagagccatcattgaccacaggc
gatgcactggacaagtaccggattattttggagaagcttgaaaatctggtgagttgtgga
gttaaggaaacagaaattcagggtgctattgctgaagttccagcaataatcctcagatgt
aaaagtcaagatgaggcagccttggctgtggctcgaaaggttttcaaaggattatatgaa
aatgcatcaaacattggacatgttagtgttcatcttgctatgctgtgttctatctgtgac
atcagcaaggttgttgttaaggagctgactagttgggtgatttactctgatgaggagcag
aagttcaacaaagacataactgttcatcttatacagagtgaactactgagccttgcagag
tataatattcatatggcggaacttattaatgctgaaagaaataagtctgcaactgtgttt
tcgatttctcttatacaaacattgctgaagattgattcaaaagctgtattggagctgcaa
gatcttgtggatgcattgggaaagcttgctgcaagacctggttctcacgagtcattgaaa
cagctagttgagatagccaagaatccttctgctaatgttatggcttcgtctggtgcttct
tgctggaaggaggataatttcaaacaatctaaggaaaaaaaggctgctatgctccctcca
agcggtggagataagagctcatttgaatgtgttgagccaggccctgctggattccatgaa
caggtctccatgctgtttgttgaatggtatcagatatgtggaagtcctggagcaaaggat
gctgcttctgctctctatgtttcacgactacaccgtagtggcctattaaaaggggatgat
gtctcagattgctttttccagaagctcatggaaatttccgtgttacactgtttatcatct
gaggtgataagtttgagtctttcccaagcatctgaagcaaaaactctgtcattcctagct
attgatctctatgccaagttggtgtactcagttgtgaagttttatccagttgatcaggga
acaagtaaaatttccctattgtctagggtcctcgcagtaactgtgaaattcattcagaga
gattcagatgagaagtcagattcctttgatccaagaccctactttaggctttttataaat
tggataattgatttgtgttcatcagatcccatatttgatggtgcaaactttcagatcttg
tctgtgtttgcaagtgccttccatgctcttcaaccacttaaagtgccagggttcagcttt
gtgtggcttgagcttgttactcatagatgtttcatgccaaaattactcaccggaaatgct
cagaacgagtggccttatttccatcgattgttggttgacttgctccagtttatggagcca
ttccttagaaatgctggactaggagaagcaccggtctgtcttctatatgaagggacactc
agggtgttgttaattcttcttcatgacttcccagagttcctctgtgactatcacttcagc
ttctgtgacgtgatacctccgatctgtgtacagatgagaaacatggttcttagtgcatgt
cctcgcaatataaagctgcctaatctttcagttcccgacgtaaagattgatctactacct
gagatcaaactatccccacgcattctgtctgaggttgatgctgctcttaaagcaagacag
cttaagaatgatgtggatgaataccttaagacaagacaacaggggtctctgtttcttagg
gagttgaagcaaacactcttactctctcctagtgaagctacccgggctgggactcattat
aacgtgcctcttatcaactcccttgtgctctatgttgggatcttggctgtacaacagctg
cagacaagaacagcagcatctaataataattcacaagtgctgctggtgctgggaaatagt
ggtccgaatcattcaacattagtgagtgctgcttttgatatcttccagactttaagcatg
gagttggacaaggaggggcgttacgtgatgttgaatgcaattgcaaatcaattgcgctat
ccaaacaaccacacacattacttctccttaaccattctctatctttttgcaaactcaaac
caggaaatgatacaagaacagataataagagtgatattagaacgtcttgttgccaaacca
cctcatccatggggactggtggccactttccttgagctcacaatgaataagaattacaac
ttctgggaaaggtcgttcaccaggtgttcacctgatattgagaacctcctgagatcagca
ctatcatccgtgctaagaattactactgttgcctcataa
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integrated database retrieval system
