Ictalurus punctatus (channel catfish): 100304600
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Entry
100304600 CDS
T04658
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b
KO
K04834
voltage-gated sodium channel type II alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ipu04040
]
100304600 (scn1lab)
Ion channels [BR:
ipu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100304600 (scn1lab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
Zip
IQ
RhlB
Lustrin_cystein
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
100304600
NCBI-ProteinID:
XP_053540267
Ensembl:
ENSIPUG00000019428
UniProt:
A0A9F7RQE1
LinkDB
All DBs
Position
12:complement(13592811..13646929)
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AA seq
2007 aa
AA seq
DB search
MAAQLLVPPGPDSFQPFLPESLAAIEQRIAEEAAQRSKGERRTDEDDENGPKPNSDLEAG
KSLPFIYGDIPPGLVSVPLEDLDPYYSNQTSFIVLNRGKAIFRFNATPALYILSPFNPIR
RLSIKVLVHSMFSLVIMCTILTNCAFMTLSNPPDWAKNVEYTFTGIYTFESLIKILARGF
CVGKFTFLRDPWNWLDFSVIVMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVG
ALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRIPQWNDTQNSTENNLTTML
NISTGFELLNTTNAFNWTEYINDKNNYYYLPNRRDALLCGNGSDAGQCPEGFSCIKAGRN
PDYGYTSFDTFSWAFLSLFRLMTQDFWENLYQQTLRAAGKPYMVFFVLVIFLGSFYLVNL
ILAVVAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATESGEYSGRGGL
SEESSSGGSRLSSKSAKERRNRRKKRKQREEEEEKADQEKFHKSESEDSIRRSGFRFSMD
ANRLSYEKKCSTPNQSLLSIRGSIFSPRRNSRASLFSFRGRARDFGSENDFADDEHSTFE
DSDSRRGSLFVPRRIERRNSTVSQCSLAAPRIMLPANGKMHCTVDCNGVVSLVGGASVPT
SPIGRLLPEGTTTESEARKKRSGSHQASDYLDDAAARKRAMSVASILTNTMEELEESRQK
CPPCWYKFANSFLIWDCYPQWLKVKEIVNMVVMDPFVDLAITICIVLNTLFMAMEHYPMT
KEFNNVLSVGNLVFTGIFTAEMCLKVIALDPYYYFQEGWNIFDGIIVSLSLMELGLANVE
GLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFG
KSYRDSVCKIAESCALPRWHMVDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIVFM
MVMVIGNLVVLNLFLALLLSSFSADNLASTDDDSEMNNLQIAVGRIQKGIAFVKSALRQF
LQSLFLAGTKPGALDEEKPLDDLHSDGKENCLSNHAPMAVDLGKDFLKEGCVSPSNGVES
HGKYGIEEGDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFSSESSDVEGSKEKLPVDTV
LSSSEGSTVDIRPPGEGAESVEIEPEESLDPEDCFTEGCMMRFQCCQVDVEKGRWRSWWT
LRKTCFIIVEHNWFESFIIFMILLSSGALAFEDIYIEQRKTVKTVLEYSDKVFTYVFILE
MLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVATALGYSELSAIKSLRTLRALRPLRA
LSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYHCVNSTTDEMLP
ISVVNNMSECMALVNESTRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRDLE
EQPDYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYY
NAMKKLGSKKPQKPIPRPTNQLQGLVFDLITKQAFDIIIMILICLNMVTMMVETDDQTQD
MDNILYWINLVFIVLFTGECVLKMFSLRHYYFTIGWNVFDFVVVILSIVGMFLSEVIEKY
FVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFG
MSNFAYVKHEAGIDDMFNFETFGNSMLCLFQITTSAGWDGLLAPILNKREPDCDSETEHP
GNSYRGDCGNPSVGIFFFVSYIIICFLIVVNMYIAVILENFSVATEESAEPLSEDDFEMF
YEVWERFDPNATQFVEYDKLSDFADVLDPPLRIPKPNKIQLIAMDLPMVSGDRIHCLDIL
FAFTLRVLGEEGEMDALRGQMEERFMASNPSKVSYEPITTTLRRKQEEMSAIIIQRAFRH
YRMRVTIKKASDMYRQRMQDNGESLPVKEVLMIGKFPENSASDKTDMTPSSASPPSYNSV
AKSEKDKYEKERREKENSTKDTRERKK
NT seq
6024 nt
NT seq
+upstream
nt +downstream
nt
atggctgcccagctgctcgttcctcccggacctgacagcttccagcccttccttccagaa
tcactcgctgccattgagcagcgcattgctgaggaggcggcccaacggtccaaaggtgag
aggcgcaccgatgaagatgacgagaacggacccaagcccaacagtgacctggaggcaggg
aaatccctgcccttcatctacggggacatccctcctggactggtgtccgtacccctggag
gacctggacccctactacagcaaccagacatcctttatagtattgaatcgtgggaaggcg
atattccgtttcaatgccacgcctgccctctacatcctgagtccgttcaaccctataagg
agactctccattaaagtgctggtgcattcaatgttcagtttagtgatcatgtgcaccatt
ctgaccaactgcgccttcatgacgcttagcaacccaccagactgggccaagaacgtggag
tacacattcacagggatttacacatttgagtctctgattaagatcctggcccgtggcttc
tgtgtgggaaaattcacattcttgcgagacccctggaactggctggacttcagcgtcatc
gtcatggcatatgtaactgaatttgtggatctgggcaatgtctctgcactgagaaccttc
agggttctgcgagcactcaaaactatttcagtgatcccaggcctgaagaccatcgtgggt
gctttgatccagtcagtaaagaagctgtcggacgtgatgatcctgaccgtcttctgccta
agtgtgtttgcgctaatcggcctgcagctgttcatgggaaacctgcggcagaagtgtgtg
aggataccgcagtggaacgacacgcagaactctaccgagaacaacctaacaacaatgctc
aacatcagcacaggcttcgagctgctcaacaccaccaacgctttcaactggaccgagtac
atcaacgacaagaataattattactatcttcccaaccgcagagatgccttgctgtgtggg
aatggcagtgatgcagggcagtgtcctgaaggattttcatgcataaaggcggggcgtaac
cctgattacggctacacgagcttcgacacgttcagctgggccttcctctccctcttccgt
ctcatgacacaggacttctgggaaaatctctatcagcagaccctgcgtgccgctggaaag
ccctacatggtgttctttgtgctggtgatcttcctgggatcgttctacctggtgaacttg
atcctggctgtggtggccatggcatatgatgaacagaaccaggccaccattgaggaggca
cagcagaaagaggaggagtttcaggccatgctggagcagctgaagagacagcaggaggag
gcgcaggttgccgcggcagcagcgacagagagtggggagtatagcggcaggggcggcctg
tctgaggaaagctcctccgggggctccagactctcctcgaagagcgccaaggagcgacgg
aacaggcgcaagaagaggaaacagagagaggaggaggaggagaaagctgaccaggagaag
ttccacaagtccgagtcagaagacagcatccgccgctcgggttttcgcttctccatggac
gccaacaggctgtcctatgagaagaagtgctccaccccgaatcagtctctcctcagtata
cgtggttcgatcttttctccgagaaggaacagccgggcgagtttgtttagttttcgaggc
cgagcccgggacttcggctcggagaacgattttgcggatgatgagcacagcactttcgag
gacagcgacagccgtcgaggctcgctctttgtacctcggcggatcgagaggaggaactcg
acggtcagtcagtgtagccttgccgctccacggatcatgcttccggccaatgggaagatg
cattgcactgtcgactgtaatggagtggtgtcgttggtgggcggagcctctgtgccaact
tcaccgattggccggttgcttcctgagggcacgacaacagagtcagaggctcgtaagaag
cggtctgggtcacaccaggcctctgattacctggatgacgctgcagctcggaaaagagct
atgagcgtagccagtattctcacaaacactatggaggagctggaggagtcgagacagaag
tgccccccctgctggtacaaatttgccaacagcttcctaatctgggactgctacccccag
tggctgaaagtgaaggagatcgtcaacatggtggtaatggacccattcgtcgacctggca
atcaccatctgcatcgtcctcaacaccctcttcatggcaatggagcattaccccatgacc
aaggagttcaacaacgtgctctcggtcggaaatctggtattcacagggatcttcacagct
gagatgtgtttaaaggtcattgccctggacccctactactacttccaggagggttggaac
atctttgatggcatcatcgtgagtttaagcctgatggagctgggactggctaatgtggag
gggctctctgttctcaggtctttccgattgctgcgagtgttcaagctggccaagtcatgg
cccactctgaacatgctgatcaagatcattgggaactcggtgggcgccctgggcaacctg
accttagtcctggccatcatcgtcttcatattcgccgtggtgggcatgcagctgttcgga
aagagctaccgcgacagcgtgtgcaaaattgcggaaagctgcgctcttccacgctggcac
atggtggacttcttccactcgttcctgatcgtgttccgagtgttgtgtggcgagtggatc
gagaccatgtgggactgcatggaagtggccggccagagcatgtgcctcatcgtcttcatg
atggtcatggtgattggaaacttggtggtgttgaacctcttcctggccttgctgctgagc
tccttcagcgccgacaacctggcctcgacggacgacgacagcgagatgaacaacctgcag
atcgccgtgggtcgcatccagaagggcattgcctttgtgaagtcagcgctgaggcagttc
ctacagagtctcttcctggccgggaccaaacccggcgccctggacgaggagaagcccctg
gatgacctgcacagcgacggcaaggagaactgcctctccaaccacgcccccatggccgtc
gacctcggtaaggactttctcaaggaaggatgtgtgtcgcctagcaacggggtggaaagc
cacgggaagtatggcatcgaggaaggggactacatgtcatttatccacaaccccagcctc
acggtcacggtgcccattgccgtgggcgagtcagacttcgagaacctcaacacagaggat
ttcagcagcgagtcgtccgacgtggagggaagcaaagagaagcttcctgtggacacagtt
ctgagttcttccgagggaagcacagtggacatcagacccccaggagagggggccgaatcg
gtggagatagaaccagaagagtcactggaccccgaggactgctttactgaaggctgcatg
atgaggtttcagtgctgtcaggtggacgtggagaagggacgctggaggagctggtggact
ctcaggaaaacctgctttatcatcgtcgagcacaactggtttgagtccttcatcattttc
atgatcctgctgagcagtggtgctctggcttttgaggatatctacatagagcagcggaag
acggtcaagacagtgctggaatactcggataaagttttcacttacgtcttcatcttggag
atgttgctgaaatgggtggcttacggcttcgtcaaatatttcaccaacgcctggtgctgg
ctcgacttcctcatcgtagatgtgtctctggtcagccttgttgctactgctctgggttac
tctgagctgagtgccattaaatcattgaggactctacgtgctctgagaccgctaagagca
ttgtcacgcttcgagggcatgagggtcgtagtgaacgctctgctcggcgccatcccctcc
atcatgaatgtgctgcttgtgtgtctgatcttctggctcatcttcagcatcatgggcgtc
aacctgttcgccgggaagtactaccattgcgtcaacagcaccacggacgagatgttaccc
atcagcgtggtgaacaacatgtccgagtgcatggcactggtcaacgagagcacgcgctgg
aaaaacgtcaagatcaactttgacaacgtgggagccggatacctggccctactacaagtg
gccacttttaaaggctggatggacatcatgtacgccgcagtagactctcgcgatctggag
gaacaaccagactatgaagtgaacctgtacatgtacctgtacttcgtcatcttcatcatc
tttggctccttcttcacactcaacctcttcattggtgtcatcatcgataacttcaaccaa
cagaagaaaaagttcggaggtcaggatattttcatgacagaagagcagaaaaagtactac
aacgccatgaagaagctcggctcgaagaaaccgcagaaacccatccccagacctacaaac
caacttcagggccttgtctttgacctgatcaccaagcaagccttcgacatcatcatcatg
atcctgatctgcctgaacatggtgaccatgatggtggaaactgatgaccagacacaagac
atggataacatcctgtactggatcaacctggtcttcatcgtgctcttcaccggcgagtgt
gtgctgaagatgttctcgctgagacactactacttcacgatcggctggaatgtgtttgac
tttgtggttgtgattctgtccatcgtcggaatgttcctctcagaggtgatcgagaagtat
tttgtgtcgcccaccttattccgagtcatccggctggctaggatcggccgtatcctccgt
ctcatcaagggggccaagggtatccgcaccctcttgttcgccttaatgatgtcacttcct
gccttgttcaacatcggactcctgctcttcctggtcatgttcatctatgccatttttggc
atgtccaactttgcctatgtcaaacacgaagccggaatcgatgacatgttcaactttgag
acgtttggaaactccatgctgtgcctattccagatcacaacgtccgctggctgggacggg
cttctggcgcccatcctgaacaagcgtgaacctgactgcgacagtgagactgagcaccca
ggcaactcataccgcggcgactgcggcaacccatcagtgggaatcttcttcttcgtcagc
tacatcatcatctgcttcctgattgtggtcaacatgtacatcgctgtcatcctggagaac
tttagcgttgctacggaggaaagtgccgaaccgttaagcgaggatgactttgagatgttc
tacgaggtgtgggagcgcttcgacccgaacgctacgcagtttgttgagtatgacaagttg
tcagactttgcagatgtcctggacccaccgttgcgcatccctaagcccaacaagatccag
ctgatcgcgatggacctgccgatggtcagcggagaccggatccactgcttggacatcctg
tttgcctttacactgcgtgtgctgggcgaggagggtgagatggacgcgttgcggggccag
atggaggagcgcttcatggcttccaatccatccaaagtgtcctacgagcccatcaccacc
accctgcggcgcaagcaggaggaaatgtcagccatcatcatccagcgagccttccgacac
taccgcatgcgcgtcacgatcaagaaggcgtcagacatgtaccgccagcgaatgcaggat
aacggcgaatctctgcctgttaaagaggttctcatgatcgggaagtttccagagaactcg
gcatcagacaaaacggacatgaccccgtcttcggcttcaccgccctcgtacaacagcgtg
gccaagtcagaaaaggacaaatatgagaaggaaaggcgggagaaggagaacagtacaaaa
gacacacgcgagagaaagaaatga
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integrated database retrieval system
