Ictalurus punctatus (channel catfish): 108258143
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Entry
108258143 CDS
T04658
Name
(RefSeq) tumor necrosis factor receptor superfamily member 21 isoform X1
KO
K05157
tumor necrosis factor receptor superfamily member 21
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04060
Cytokine-cytokine receptor interaction
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
108258143
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04050 Cytokine receptors [BR:
ipu04050
]
108258143
04090 CD molecules [BR:
ipu04090
]
108258143
Cytokine receptors [BR:
ipu04050
]
Tumor necrosis factor receptors
TNF receptor superfamily
108258143
CD molecules [BR:
ipu04090
]
Proteins
108258143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNFR_c6
Death
Ephrin_rec_like
CARD
Motif
Other DBs
NCBI-GeneID:
108258143
NCBI-ProteinID:
XP_017312065
Ensembl:
ENSIPUG00000023839
UniProt:
A0A2D0Q3W7
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Position
25:467728..486157
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AA seq
599 aa
AA seq
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MSVTWTLTLLYTLLGDILVQALTSSSGTEGSLSSRHYRHIDPATGSQLMCDKCPAGTYVS
SHCTNSTVRECTECPGGTFTRGENGVQQCHRCRSHCQAPLVEKSPCTATTDRTCVCPPGT
SAEHVECLHHPLCLPGWGVRKQGSKLEDVRCRRCPRGTFSNVPSRVLRCRTHTDCQALGM
LLLLDGTDKTDSVCGTSSLGPVSSSSHSSDPALGAAAAELTTPQTTLVMSDILTPTSPSD
EAVVLNSPTPDPVPSWNLLPANQRALSEKKNQGLSYRPIRRGSPRPSMHKHFDINEHLPW
MIVLLLLLFLVVIVVCSVKRSSRLIKKGPRQDPSSIMEKAIHTKPSSPAGNSKEKWIYYS
NCQGVDILKLVAAQIGSQWIDMYQSLANANEREVAAFSKGYTADHERAYAALQHWTICDS
DANLAKLINALHHHRRIDVVEKIRGVMEDNPQFDLNQLTMSVNVSQGASPSHKPLDALGL
VVEHSPLDRTKGFFPDESEPLLRCDSTSSKDSALSRTGSFITKEKKDTVLRQVRLDPCDL
QPIFDDMLHILNPDELHVIEEIPTAEDKLDRLFEIAGVKSQEASQTLLDSVYSHLPDLL
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtcacttggacgctaacgcttctctatactctgcttggtgacatcttggtccag
gctttaacctccagctccggcacagagggctctctatcctcccgtcactatcgccacatc
gaccctgccaccggtagccagcttatgtgcgacaagtgtccagcgggcacgtacgtgtca
tctcactgtaccaatagcactgtgcgagagtgcaccgagtgcccaggaggcacattcaca
cggggtgagaacggtgttcagcagtgccaccgctgccgaagccactgccaagctccttta
gtcgagaaatctccttgcacagctactacggaccgcacgtgtgtgtgcccgcctggcact
tccgccgagcacgtggagtgcctccaccaccctctgtgcctgcctggttggggtgtgcgg
aaacaggggagcaagttagaggacgtgcgctgccgcagatgtccgcgtggcaccttctct
aacgtgccgtctcgtgtgctgaggtgccgaacgcacaccgactgccaggcgctaggaatg
ctgctgttgctcgacggcaccgacaagacggacagtgtgtgtggaacctcgtcgttaggc
ccggtctcgtcatcctcacacagcagcgaccccgcactcggagcagcagctgcagaatta
acaactccacagactaccctagtcatgtcggacattctgacccccacaagcccctcggat
gaagcagtagtcctgaattctcccacaccggatcccgtgccatcatggaatctcctgccg
gcgaatcagcgagctctatcggaaaagaagaaccagggtttgtcctacagacccatcagg
agaggctcgcctcggccaagcatgcacaagcactttgacatcaacgagcacctgccctgg
atgatcgtgctgctcctgttgctgtttctcgtggtgattgtggtgtgcagtgttaaacgc
agctcacggctgataaagaaagggcccaggcaggaccccagcagcatcatggagaaagcc
attcacaccaagcccagctctcctgccgggaacagcaaggagaagtggatctactactcc
aactgccagggtgttgatattctaaaattggtggcagcccagattggcagccagtggatc
gacatgtaccaatccctggctaatgctaacgagcgggaagtggctgccttctccaaaggc
tacaccgctgaccatgagagggcatacgccgccttgcagcactggaccatctgcgatagt
gatgccaacctggccaagctgataaacgccctccatcatcaccggcgcatcgatgtggtc
gagaagatccgcggtgtcatggaagacaaccctcagtttgatctgaaccagttgacgatg
tctgtgaatgtaagccaaggcgccagccccagccataagcctctggatgcactgggattg
gtagtggagcactctccactggaccgcaccaaaggcttcttccccgacgagtctgagccg
ctgctgcgctgcgactccacctccagcaaagactccgccctgagccgcacaggctctttc
attaccaaagagaagaaggacacagttttgcggcaggtgcgcctcgacccatgcgaccta
cagcccattttcgatgacatgctgcacatccttaacccagacgagctgcacgtgatcgag
gagatacctacggccgaggacaagctggatcgtctgtttgagatcgccggagtcaagagc
caagaggccagccagacgctgctcgactccgtgtacagccacttgcctgatctcctatag
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