Ictalurus punctatus (channel catfish): 108268474
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Entry
108268474 CDS
T04658
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
108268474
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ipu04040
]
108268474
Ion channels [BR:
ipu04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
108268474
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
108268474
NCBI-ProteinID:
XP_017328974
UniProt:
A0A2D0REK6
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All DBs
Position
8:complement(21503235..21522169)
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AA seq
1073 aa
AA seq
DB search
MIATLCQEPVETFIQEVEEPVEDPEETEEEEEDADVPCVEEPTLPSPETKILTAGQCVSP
EPAEEPEDPEEEESDSSSEAESEPDPITQQPKSCDGASVKQNVTQDEGTLAEEGTCVPFR
CDALKACLMRIPCVPVCLNSFNQLLKKNNITLPQVPPIPKLPSRLSKITPQIPPLPTRLN
QLPQRITQIPQQISQHVPKLPEHFPSFPRKLPTFPEQFSCRFPHGLPKPSDLKTMPNPQQ
QQQSRDLELDHLVRQSPLHISRTPSTSLPSSILDLPNVPSYPRLPPISPSRQLSGLSNPT
FNGEDELTSARPSASSRLSIHPAVNVEDMDSDSEQHAITSHHMPQIITPQDPNLKTLTVP
RPPKLSRTRKKLYSSGDEEDEELETQVRAWPSQSSITSADEALKERPSSAASQASTMVNE
RLQELAKLFKARTERAKEKLIDPDDLDEDTPPDTAVPPPEPPTEPAPVEESQPTLTDEQE
VYIKLLCFKVKSQSRIGRLIQYRFPSSIDPFTNLGYVLWLFFVTLAWNWNVWMIPVRWAF
LYDVKGSLYPWLIADYLCDTIYILDILLFQPRLQFIRGGDIITDKKEMRANYMKDLRFKL
DMVSLLPLELFYLLDGVKPLLRCPRILKILSFFEFNNRLEAILTKAYVYRVIRTTSYLLY
SLHVNACLYYWMSNIRGLGATTWVYNGQGNAYIRCFYFAVKTLITIGGLPEPTALEEYIF
QLINYFIGVFAFSIMIGQMRDVVGAATADQTHYRSCMDSTAKYMGSNRIPKDVQNRVKTW
YNYTWQAQGMLDEEELLVQLPDKMRLDIAVDVSYSIVSKVPLFEGCDRQMIYDMLKRLRS
VVYLPGDYVCKKDEVGREMYIIKSGAVQVVGGPDGKTIFVTLKAGSVFGEISLLAVGGGN
RRTANVIAHGFANLFILDKKGLNEILVHYPESQKLLRKKAKKMLADKKPEKKTEEKEPVR
VIPARKETPKLLKATLEMTEKSGLRGTLAKLKGKKNNKSCVSLQPSICSSVTPGSPIERQ
HSEQEADILSQISDSTIQGPPISPSDLEDQRRSLREGPVLNERTVMGKDKMDE
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgatagccacattgtgtcaggaaccagttgagacgttcatccaggaggttgaagagcca
gtagaagatccagaagagacagaggaagaagaagaggatgcagatgttccctgtgtagaa
gagccaacgcttccttctcctgagacgaagattttaacagcaggtcaatgtgtttctcct
gaaccagctgaagagccagaggacccagaggaagaggagtctgatagctcctcagaggct
gaatcagagccagatccgatcactcagcagccgaagtcgtgtgacggagccagcgtgaag
cagaacgtcacccaggatgaaggcacattagctgaggagggaacttgtgttcccttcaga
tgtgatgcgttgaaggcctgcctcatgcgcattccctgtgttccagtgtgcctgaactcc
ttcaaccagctgctgaaaaagaacaatatcactctgccccaagtgccccccatacccaag
ctgccctctcgactatccaagataaccccacagatccccccactgcctaccagactcaac
cagctacctcaacgaatcacacaaattccccagcagatttcccagcacgtacccaaactt
cctgagcacttcccttccttcccccggaaacttcccactttccctgaacaattttcctgc
aggtttccccacggacttcccaaaccatcagacctcaaaacaatgcctaatcctcagcag
cagcaacagagtcgggacctggagctggaccatctggtccgccagtccccccttcacatc
tcccgtaccccgtccacttccttgcccagctccattctggacttacccaatgtgccatcc
tatccccgcctgccccccatcagcccatcacgccagctctcaggcctctccaaccccacc
tttaatggcgaagatgaactcacctccgctagaccttcagctagctctagattgagcatt
cacccagccgtaaatgtggaagatatggactcagacagtgagcagcatgcaataacttcc
caccacatgccccagatcatcaccccacaagaccccaacctcaaaaccctcaccgtgccc
agaccacccaaattgagcagaaccagaaagaagctgtactcttcaggagatgaggaagat
gaggagctggagacgcaagtcagggcctggccgagccaaagcagcatcacgagtgctgat
gaggcgctgaaggagcgtccctcatcagccgccagtcaggccagcacgatggtgaatgag
cgtctgcaagagctggccaaactatttaaagcaaggacagagcgcgccaaggagaaactc
atcgatcccgatgacttggacgaggacaccccacctgacactgcggtgcctcctcctgag
cctccgacggaaccagcgcctgttgaggagagtcagcccactctcactgatgaacaggaa
gtgtatatcaagctgctgtgcttcaaggtgaagtctcagtcaaggatcgggcgcctgatc
caataccgcttcccatccagcatcgacccgtttaccaatctgggttatgtcctgtggctc
tttttcgtcactttggcctggaactggaacgtgtggatgatcccggtgcgctgggctttc
ctctacgatgtcaaaggctccctttacccgtggctgatagccgactacctgtgcgacacc
atctacatcctggacatcctgctcttccagccacgcctgcagttcatccgcggcggtgat
attatcaccgacaagaaggaaatgagagccaattacatgaaagatctgcgatttaagctg
gacatggtcagccttcttcccctggagctcttctatctcctagatggggtcaaacctctc
ctccgctgcccacgaatactgaagatcttgtctttctttgagtttaacaaccgtctggag
gccattttgaccaaagcctatgtctacagagtcattcgcaccaccagctaccttctgtac
tcccttcatgttaacgcctgtctctattactggatgtcaaacatacgaggcctcggagcc
accacctgggtatacaacggacagggcaatgcatacatccggtgtttctactttgctgta
aagactctgatcactattggtggactgccagaaccgaccgcactcgaagagtatattttc
cagctcatcaactactttattggcgtattcgctttctccatcatgattggacagatgaga
gacgtggtgggcgctgcgacagctgatcagacacactaccgctcatgcatggacagtaca
gcaaagtacatgggctctaaccgcatccccaaagacgtgcagaaccgggtgaagacctgg
tacaactacacatggcaggctcaaggcatgctggatgaagaggagttgcttgtgcagttg
ccagacaagatgaggcttgatatagcagtggatgtgagttactccattgtcagcaaagtt
ccactgtttgagggctgtgacaggcagatgatctatgatatgctgaaacggctcagatca
gtcgtgtaccttcccggagactacgtctgtaaaaaggatgaagtaggtcgagagatgtac
atcataaagtcaggagcggttcaggtggttggcggtccagacggaaaaactatatttgtg
acgctgaaagcaggatctgtgttcggcgaaatcagcttgttagcggtgggaggcggaaac
cggcgaacagccaacgtcatagcacacggctttgctaatctcttcatcttggacaagaag
ggcctcaacgaaatccttgtgcactatcccgagtcccagaaactgctacgcaagaaagca
aagaagatgctggcagataagaagccggagaaaaagacagaggagaaggagccagtacgg
gtgattcctgcgcggaaagaaacccctaaactgttaaaggccacgctggaaatgactgag
aaatcgggcctgcgaggcacactggccaagctgaagggaaaaaagaataacaagtcctgt
gtttcattacagccatccatctgttcctcggtgacacctggctcaccgatcgagaggcaa
cactcggagcaagaggccgacattctctctcagatctcggacagcacaatacaaggacct
cccatcagcccctccgacctcgaagaccagaggcgctcactgcgtgaagggccagtgcta
aatgagaggacggtaatggggaaggacaagatggacgagtaa
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