Ictalurus punctatus (channel catfish): 108268688
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Entry
108268688 CDS
T04658
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1 isoform X1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108268688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108268688
Enzymes [BR:
ipu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
108268688
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108268688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
CbiA
TniB
MMR_HSR1
Sigma54_activat
nSTAND3
Motif
Other DBs
NCBI-GeneID:
108268688
NCBI-ProteinID:
XP_017329272
Ensembl:
ENSIPUG00000016238
UniProt:
A0A2D0RFF5
LinkDB
All DBs
Position
8:complement(25313944..25320516)
Genome browser
AA seq
449 aa
AA seq
DB search
MYGMSTEAPEKAGDEGPSSGGGAGSGGGSRFDLEKETELRFEVEAGERVQLELLSGLAEV
FGSELNRNKKYTFGPGSKIAVFTWQGCSLSLSGKTEVAYVSKDTPMLLYLNTHAALEQMR
RQAERENERGPRVMVVGPTDVGKSTVSRLLLNYAVRLGRRPTLVELDVGQSSVSVPGTMS
ALYIERPADVEEGFSVQAPLVFHFGSTTPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVG
GCIINTCGWVKGSGYQALVHCASAFQVDVVLVLDQERLYNELKRDLPHFVRVVLLPKSGG
VVERSKDCRRETRDDKIREYFYGFRSTSFYPHAFDVRFSDVRIYKIGAPSIPDSCLPLGM
SQDDTQLKLVPVSPGRDLTHHVLSVSCVEDDAEAGESRSRGILESPVCGFIVVTAVDTQA
QVMTVLAPAPRPLPRHTLLIMDIRFIDLK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgtatggcatgagcactgaagcgcccgagaaagccggtgacgaaggcccaagctccgga
ggaggcgcggggagcggcgggggttcgcgctttgacctggagaaggagaccgagttgcgg
tttgaggtcgaggccggagagcgggtgcagctcgaactgctgtccggtttggccgaggtg
ttcgggtccgaactgaaccggaacaagaagtacacattcgggcctggttcgaagatcgct
gtgttcacgtggcagggatgcagcctgtcactcagcggcaagaccgaggtggcttatgtc
tccaaagacacgcctatgctgttgtatctgaacacacacgctgcattggagcaaatgaga
cggcaggctgagagggaaaacgagagagggccaagggtcatggtggtggggccgaccgac
gtggggaaatccacagtaagtcgtctgctgctgaactacgccgtgaggctgggcaggagg
cccacgcttgtggagctggacgtcggccaaagcagcgtttctgttccagggacaatgtca
gcgttgtacattgagcgtccagcagatgtcgaggaaggcttctccgtccaggctcctcta
gtcttccactttggctccacgacaccagggaccaatatcaaactctataacaagctgacg
tcctgcctagcggaggtgttctcacagcgctgtgaggtgaaccggaaagccagcgtagga
ggctgcatcatcaacacgtgcggctgggtgaagggttcaggataccaggcgctggtccac
tgcgcttcagcgttccaggtggacgtggtgctggtcctcgatcaggaacgcctgtacaac
gagctcaaacgggatctgccacactttgtccgcgtggtgctgctacccaagtccggcggt
gtggtagaacgctccaaagactgcaggcgggagacacgtgacgataagatccgcgagtat
ttttatggtttccgcagcacctcgttctacccacatgctttcgacgtgcgcttctcagat
gtgcgcatctacaagatcggagcaccctccattccagactcgtgtctgccactgggcatg
tcgcaagatgacacgcagctgaagctggtgccagtgagcccagggcgtgacctgacccat
cacgtgctgagcgttagctgcgtggaggacgacgccgaggcaggggagagccgcagcagg
gggattttagagagtccggtttgtggcttcatcgtggttacggctgtggacactcaggct
caggtgatgaccgtactcgctccagcacccagaccgctgcctcgacacacactcctcatc
atggacattcgcttcatagacctcaaatga
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