Ictalurus punctatus (channel catfish): 108270406
Help
Entry
108270406 CDS
T04658
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108270406
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108270406
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108270406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Linker_histone
Helicase_C
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
PHD
zf-C3HC4_3
zf-RING_5
DUF4777
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
108270406
NCBI-ProteinID:
XP_017332552
Ensembl:
ENSIPUG00000002900
UniProt:
W5U7H5
LinkDB
All DBs
Position
9:complement(18865620..18879743)
Genome browser
AA seq
1635 aa
AA seq
DB search
MSSRRKRAAPVRMDEETKEKLNWNMHEHRRTEGDFEDLEAFPQSSVSYQPDPVPDVSNAE
VLSCSSLLPAEKEEEEEAGSSMQDFLKDTTELNVPSVFALGSGWKALIGEFELYPKVPVE
LANVTFCLQQTGDVLSINLTSTSSEELTSCPVECSFGGLLLEDLDWLQKRKVIQLCHLSG
EGSVKLKIFLLESGLGRPEFLSEGNGRLRRASQLLQKLMELFHDFIIPEIMENAEEECDT
DLERQNVEELYDYVRHVHQREEQKQSFDVQQPALIPVLRPYQSQAVNWMLIKERYKSEFS
QEQKLHFLWREVITVCGKKLFYNPYTGCLIREFPLAGVDWPGGILADEMGLGKTVEVLAL
ILSHTRQGLKQSTLTLPVGQSVNYYVPPPPLEKQSIKQCEIKPREKITHPAVRVMLLTAI
KEMKVGKGASINAIFTYLRTMYKYDPLKNRNHIKRTLTKTITEGLVEQVKGRGLAGSFKL
GKNYKEKKKKPVTPQKPTGEAPHRRTSRRCAGQEREAVINSSSAASDSEDTMCSLDPPVL
AEEPKQEHDSQADCEKETADCHVANAKPEPMESNENHQLENPQSDITQGSQSEPFHPPIR
ASVVPFNTTDYRFECICGDLGLVDYKARVQCMNCLLWQHAECVNYKEENLATTPFYCPHC
LVAMTPVPTGATLIISPSSICHQWVEEINRHIRSSSLRILVYQGVKRHGFIQPHILAEQD
VVITTYDVLRTELNYVDLPHSNSKDGRRFRNQKRYMAVPSPLVAVEWWRVCLDEAQMVEC
TTAKAAEMALRLTSINRWCVSGTPVQRGLEDLYGLVLFLGVDPYWVKYWWDQLLYRPYCR
GNTGPLYSVIGQLLWRSAKKDVIDQIQIPAQTEEIHWLNFSPVEGHFYHRQHEVCSQDAL
LKLRKISDWSLKLGSLDRRTVNTILYPLLRLRQACCHPQAVRGEFLPFQKSTMTMEELLK
SLQKKCRVECEEAHRQLVCALNGLAGIHIIRVEFIEAAEMYREVLRSSEEHKDRLKTDSL
QRLHATHNLMELLNAKHPGIPPTLRDDRLKEEAEQLKQHYMTKVSSEVSEAQQNLLPVLQ
NIRDLKRKVNLRSPWWLDVIQQAIQYSVDDDLVGRIQNELTCSYKQQANKLSMADKFRDA
RGLQFLLSTQMDELMTSQKSVQDAVKELEVPPSQEVIEEATACHLRPVRLPLNNCVFCKS
DELFTDYESKLFSHTVKGQTAIFEDMIEDEEGLMDDRLPTTSRGLRAASETERTLKAILS
FAKIRRLDSELIEEGNTFMELFEFWKKEYKVLHEYWMTLRDRVSAIDELGMATERLRVRL
PDEPKPKVLHIIEPHEVEQNRVKLLNDRAVAKSQLQKKLGQFLYLTNLEKSQDKSTGGLN
PEPCPICARSLGQEWAVLTCGHCFCNECISIIVEQYSVGNRKKAIKCAICRQTTSHTEIS
YVFTTQAADQDQEIPVKGSHSTKVEAVVRALKKIQMTDKGAKSLVFSTWQGVLDIIAKAL
FDNNMEFSQINGIHKFQENLSSFKYEENINILLLPLHTGSNGLNIIEATHVLLVEPILNP
AHELQAIGRVHRIGQTKPTFVHRFLIKSTIEERMQAMLKTAEKSHSATAMKHSEASVFTV
ADLAELFTEDSDTLE
NT seq
4908 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaggaggaaacgtgcagcgcctgtccgtatggacgaagagaccaaggagaaa
ctaaactggaacatgcatgagcaccgcaggactgagggggattttgaggaccttgaggca
ttcccccagtcatctgtgagctatcagcctgaccctgttcctgatgtgagcaatgcagag
gtactcagctgttcctcccttctgcctgcagaaaaggaggaggaggaggaagcagggagc
tccatgcaggacttcttaaaagacaccactgagcttaatgtgccttcagtgtttgcgctg
ggttcaggctggaaagctctgattggagagtttgaactctatccaaaggtccctgttgag
cttgcaaacgttaccttttgcctgcagcagactggagatgttctgtcaataaatctaact
agcacaagctcagaggagctcacaagctgccctgtcgagtgctcatttggtggattattg
ctggaggatttggactggctgcagaaaagaaaggtcatacagctctgtcatttatctgga
gaaggatctgtaaagctaaagatatttcttttggagtcaggattgggacgaccagagttc
ctcagtgaaggaaatggacgcttaagaagagccagtcagctcttgcaaaaactaatggaa
ttgttccatgacttcattatccctgagatcatggaaaatgcagaagaagaatgtgacact
gatctggagaggcagaacgtggaagaactctatgactacgtcagacacgttcaccaaaga
gaagagcagaagcagagttttgatgtacagcaaccagccctcatcccagtgctccggccg
taccagagtcaggctgtcaactggatgctgataaaggaacggtacaagagtgaattctcc
caagaacaaaaactacatttcctttggagggaagtgatcacggtgtgtggaaagaagctg
ttttataacccctacacgggctgtctgatccgggagtttccgctggctggggtggactgg
cctggaggaatccttgctgatgagatggggctgggaaagactgtagaggtgctggccctt
attttgagccacactcgccaaggcctaaagcagagtacgctcaccttacctgtgggacag
tcagtgaactactatgtccctcctcccccattagagaagcaaagtatcaagcagtgtgag
ataaagccaagagagaaaatcacccaccctgctgtccgtgtgatgcttctgactgccatt
aaggaaatgaaagttggtaaaggagcctcaatcaatgccatttttacgtacctccggact
atgtacaaatatgaccctctgaaaaaccgcaaccacattaaaaggacgctgacaaaaact
ataacggaaggtttagtggaacaggtcaaaggtcgaggattagctggctccttcaagctg
ggaaagaactacaaagaaaagaagaagaaacccgttaccccacaaaagccaactggggag
gctcctcacaggagaacatcacgtcgttgtgcaggccaggagcgagaagcagttataaac
tcctcaagtgcagcttctgactctgaggacacaatgtgcagcctggaccctcctgtactc
gcagaggaaccaaagcaagagcatgattcacaagcagattgtgagaaagagaccgcggat
tgccatgtggctaatgctaaaccagagccgatggagagtaatgaaaatcaccagctagaa
aatcctcagtcagatattacccaaggttcacagtcagagccttttcatcctccaattcga
gcatctgtggttcccttcaatacaaccgattaccggtttgagtgtatctgtggggatctg
ggcctggtggactataaagctcgggtgcagtgcatgaactgtctgctgtggcagcatgct
gagtgtgtgaactacaaggaggagaacctggcgactactccattctactgcccacactgc
ctagtggccatgactcctgttcccactggtgccactcttatcatttcccccagttccata
tgccatcagtgggtcgaagaaatcaaccggcacatccgctcttcctctcttcgaatactg
gtgtaccagggtgtgaagaggcatgggttcattcagcctcatatcctggctgagcaggat
gtggtcatcaccacctacgatgtgctgcgtacggagctgaactatgtggatctcccgcat
agtaacagcaaagatggccgacgctttcgtaaccagaaacgctacatggctgtgccaagc
cccctggtagctgtggagtggtggcgtgtgtgtctggatgaggctcagatggtggagtgc
acgacagccaaggctgcagagatggcgctgagactcacatccattaatcgctggtgtgta
agtggaactccagtacaaagaggtctagaagatttgtatggacttgttttgtttctggga
gttgacccatactgggtgaagtactggtgggatcagctgctatatagaccatattgccgt
ggaaacacaggcccactctacagtgtcattggccagctactgtggcgatctgccaaaaaa
gatgttatcgaccagatccaaattcctgctcagacagaagagatccactggcttaacttc
tctcccgtggaaggccacttttaccatcgccagcatgaggtctgctcacaggatgctctg
cttaagttgaggaagatctcagactggtcgctgaaattgggcagcttggaccgtcgcacg
gtcaacaccatcctgtacccactgttgcgcctgcgccaggcttgctgccaccctcaagct
gtcaggggagagtttttgcccttccagaaaagtacaatgacgatggaagaactgctgaag
tccctgcagaaaaagtgtcgtgttgagtgtgaggaggctcacaggcagctggtgtgtgct
ctcaatggtttggcaggaatccacattatcagagttgagtttatcgaggcagcagagatg
tacagagaagtgcttagatcatcagaagaacacaaagatcggcttaaaacggattctctg
cagaggcttcatgctacacacaatttgatggagctactaaatgccaagcatcctggcata
ccacctactcttcgagatgatcgtctgaaagaggaggcagagcagttgaaacaacactac
atgactaaggtcagttctgaagtgtctgaagctcagcagaacctcctacctgtacttcag
aacattagagacctcaaacgcaaggttaacctgcgttccccctggtggttagacgtcatt
cagcaggccattcagtactcagtggatgatgacttggttggccgcatccaaaacgagctt
acctgcagctataaacagcaagccaataaactatcaatggctgacaagttccgggatgcc
cgaggtctccagtttttactcagcactcagatggatgaactgatgacatcccagaaaagc
gttcaggatgctgtaaaagagctagaagttccaccgtcacaggaagtcattgaggaggcg
acagcttgtcacctgaggcctgtgcgccttccgctcaacaactgtgtattttgcaaatct
gacgaactcttcacagattatgagtcaaaattgttttctcacacagttaaaggacagaca
gccatctttgaggatatgattgaggatgaggagggattgatggacgacaggcttcccaca
actagtcgcggtctgcgggcagccagtgagaccgaacgcaccctgaaagccatcttgtcc
tttgccaagatccgccgcctggactctgaacttatagaggagggcaatacttttatggag
ctctttgagttctggaaaaaggagtacaaggtgttgcatgagtactggatgacgttgagg
gatcgagtgtcagccatagatgagctgggtatggctacagaaagactgcgtgtgcgtctt
cctgatgagcccaagccgaaagtgctgcacatcatagagccacatgaggtggagcagaac
agagtgaaactgttgaatgaccgggctgttgctaaatcgcagctacagaaaaagcttgga
cagtttctctatcttaccaatctggagaagtcacaggataaatcaacaggaggtctgaat
ccagagccatgtcctatctgtgctcgctctctgggtcaggagtgggccgtgctcacctgt
ggacactgtttctgtaatgagtgcatttccatcattgtggagcagtacagtgttggcaat
cgaaagaaagctataaagtgtgctatctgcaggcaaaccacttcccacaccgaaatttcc
tatgtcttcaccacccaggctgcagaccaggaccaggaaattcctgtcaaaggaagtcac
tccactaaagtagaagctgtggtccgagcccttaagaaaatccagatgactgacaaagga
gctaaatctcttgtattctctacgtggcagggcgtgctagatatcattgcaaaagcactc
tttgataacaacatggagttctcacagatcaacgggattcataaatttcaggagaacttg
agttctttcaagtatgaggagaatatcaacatcctgctgttgccgttgcacacagggtca
aacggcctgaacatcatcgaggctacccacgtgctacttgtcgagcccattctcaaccca
gcacatgagcttcaggccattggcagagtgcaccgcatcggccaaaccaaacccactttt
gtgcaccggttcctgatcaagtccactatcgaggagcgcatgcaggccatgctgaaaaca
gcagagaaaagtcacagtgctacagccatgaagcactctgaggcatcagtgttcacagtg
gctgacctggctgagcttttcactgaggatagcgacacactggaatga
DBGET
integrated database retrieval system