Ictalurus punctatus (channel catfish): 108275548
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Entry
108275548 CDS
T04658
Name
(RefSeq) troponin C, skeletal muscle
KO
K12042
troponin C, skeletal muscle
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04020
Calcium signaling pathway
ipu04814
Motor proteins
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
108275548
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
108275548
04820 Cytoskeleton in muscle cells
108275548
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ipu04812
]
108275548
Cytoskeleton proteins [BR:
ipu04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Troponins
108275548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_7
EF-hand_1
EF-hand_6
EF-hand_8
EF-hand_5
EF-hand_9
EF-hand_FSTL1
AIF-1
EH
SPARC_Ca_bdg
EF-hand_11
EF_EFCAB10_C
Phage_TAC_12
SPEF2_C
DUF5580_M
DUF7387
Motif
Other DBs
NCBI-GeneID:
108275548
NCBI-ProteinID:
XP_017341920
Ensembl:
ENSIPUG00000018272
UniProt:
A0A2D0SI12
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All DBs
Position
15:complement(15656684..15662474)
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AA seq
161 aa
AA seq
DB search
MPTEAQTDARSFLSEDMITEFKAAFDMFDTDGGGDISTKELGTVMRMLGQNPSREELDAI
IEEVDEDGSGTIDFEEFLVMMVQQMKEDQAGKSEEELSECFRIFDKNGDGFIDREEFTDI
LRSTGEPITEEEIEELMIDGDTNKDGKIDFDEFLKMMENIQ
NT seq
486 nt
NT seq
+upstream
nt +downstream
nt
atgccgactgaagcccagaccgatgcccgctccttcctgagcgaggacatgatcactgag
tttaaagctgccttcgatatgtttgatactgatggaggcggtgacatcagcaccaaggag
ttgggaaccgtgatgaggatgttgggtcagaatccaagcagagaggagctggatgccatc
attgaggaggttgatgaagatggcagtggcaccattgacttcgaggagttcttggtgatg
atggtgcaacagatgaaggaagatcaggcaggcaagagcgaggaagagctgtctgaatgc
ttccgtatctttgacaagaatggagatggtttcattgaccgtgaggagtttactgacatc
ctacgttccactggagagccaataacagaggaggagatagaagagctcatgatagatggt
gacacaaacaaagatggcaaaattgactttgatgagtttttgaaaatgatggagaacatt
cagtaa
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