Ictalurus punctatus (channel catfish): 124627995
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Entry
124627995 CDS
T04658
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ipu03009
]
124627995
03012 Translation factors [BR:
ipu03012
]
124627995
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124627995
5.6.2.5 RNA 5'-3' helicase
124627995
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
Other ribosome biogenesis factors
124627995
Translation factors [BR:
ipu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124627995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
DEAD
ResIII
Viral_helicase1
NAT10_TcmA_helicase
nSTAND3
SLFN-g3_helicase
AAA_16
AAA_22
UvrD-helicase
PhoH
IstB_IS21
AAA_25
nSTAND_NTPase5
SRP54
Flavi_DEAD
AAA_31
Zot
AAA_33
NPHP3_N
ATPase
ABC_tran
AAA_18
nSTAND6
AAA_5
DUF3739
Herpes_ori_bp
HEM4
UvrD_C_2
AAA_7
AAA
Motif
Other DBs
NCBI-GeneID:
124627995
NCBI-ProteinID:
XP_047010919
UniProt:
A0A979ESY0
LinkDB
All DBs
Position
4:complement(13689613..13701081)
Genome browser
AA seq
996 aa
AA seq
DB search
MEVESFVSKSLELLQEERGAEIEETRAWQKNLSLKNLQQKGVCLLKLHIGSQRTGMHGRL
LVSFEPRKSIGPSVLPSHGFGPGDIVGLYESEGCSQPNQLCSGVVTHVTQASITVAFDET
HDGLNLENDVLYNIMKLANDVTYKRLTHALNSLNGYRSGPATQLISVLFGYSEPGMLSQQ
NAVEWINNELDSSQQEAVSFALSQKEVAIIHGPPGTGKTTTVVEVILQAVKQGQKVLCCA
PSNVAVDNLVERLAKSKAKVLRLGHPARLLESIQKHSLDAVLAQSDNTNIIADVRKDMDK
AFSQIKKVRDKGQRSSLRREIGELRKELKSREKMAITQILKRASVILATNTGASDYGALK
YLPSEHFDLVVIDECAQALESSCWIALLKARKCILAGDYKQLPPTIKSQNAAAKGLSVSL
MERLIQKYGDSIVRMLTTQYRMNSAIMQWASEQMYQGKLTAHPSVEKHLLRDLAGVALVE
ETNMPLLLVDTAGSGLNEMEDTDEHSKGNQGEVDIVALHVRTLTEAGVKAKDIAVIAPYN
LQVDLLRQKLSNDYPDLEIKSVDGFQGREKEAVLLSLVRSNRKGEVGFLAEDRRINVAVT
RARRQLVVVCDSQTVRNHEFLRSLVVYMSEHGEVRTAFEYLEDLVPENYQRDFKDKQNNI
KVSSTNTKARNQQGERGEKKQNKVSESKSKGNGQSKDDNVKSGLPKPKADDQLESEMKKA
EMRQQLLNFLDNQGQTELQFPSSLNSHERLLVHQLCEELELKHVSKGTGKQRHITVSKPV
AEPEERPEEESESTKTEIQIPEELTEKESDTQPLKSALDLKSLHLERMRREREKREEKIQ
NKRLETELKDIKGPSAKKNKDVTKGKGKKKAGAVDIAAAATADDDFDALIDAVVKAESVC
GFMKCKASVLTLGQLCVYCNRQYCLSHHIPEVHGCGDKAKAQARMRISKEGVLYAGSGQK
DKSMDPNKKAYLQRKLDSKLKDMASQRKSKSKDKEP
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggaggttgaaagtttcgtttccaagtcgcttgaactcttacaagaggagagaggagct
gagatagaagaaaccagggcatggcaaaagaatctgtcactaaaaaatctacaacagaaa
ggagtatgcttgctgaaacttcacattggaagccagaggacaggaatgcatggcagactt
ctggtctcatttgagccccggaaaagtatcggcccttcagttctacccagtcacggtttt
ggacctggtgacattgtgggtctttacgaatcagaaggatgcagccagcctaatcagctt
tgctcaggtgtggtgacgcatgtgacgcaggcatcaataacagttgcttttgatgaaaca
catgatggcctcaacctggaaaatgatgtactatacaatattatgaagcttgcaaatgat
gtaacctataaacgattgactcatgctttaaactctttgaatggctacagaagtggtcct
gccacccaacttattagtgtcctttttggttactctgagcctggaatgttgtcacagcag
aatgctgtagagtggatcaataatgaattagacagttctcagcaggaggctgtgtcgttc
gcactgtctcagaaagaggttgctatcatacatggaccaccagggacggggaaaaccaca
acggtggttgaagttattctacaggctgtaaaacaaggccagaaggttttgtgctgtgca
ccatccaacgtggcggtggacaatttggtggagcgcctggccaagagcaaggctaaggtc
ctgcgactgggacatccagcacgcctgctagagtcgatccagaaacattcattggatgca
gtgcttgcacagagcgacaacaccaacatcattgcagatgtccgaaaagacatggataaa
gcctttagtcagataaagaaagtgcgtgataaaggacagagaagcagcctaaggcgtgaa
ataggagagctgcgaaaggaactgaagagcagggaaaagatggccatcacccaaatcctg
aaaagggccagtgtcattctggcaaccaacactggagctagtgattatggtgcactgaag
tatttgccaagcgagcatttcgacctggtggtgatagatgaatgtgctcaggctctggag
agcagctgttggattgcactcctcaaagcacgcaaatgcatcctggctggagactacaag
cagctgccacccacaattaaatctcagaatgcagctgctaaaggtctgtctgtgagttta
atggagcggctgattcagaagtacggagactccatagttcgaatgctgaccactcagtac
cgtatgaacagtgctatcatgcagtgggcctcagagcagatgtaccaagggaaactgacc
gcacatccttcagtggagaaacatttattgagagacctggctggtgtagctcttgttgag
gagaccaacatgcctctgctcttagttgacactgctggcagtgggctcaatgaaatggag
gacacagatgagcactcaaaaggcaatcagggtgaagttgacatagtggcacttcacgtg
agaaccttgactgaggctggagttaaggccaaagacattgcagtcattgcaccttataac
ctacaggtagatctgctaagacagaagctctcaaatgactatcctgacctggagatcaaa
tctgtagatggctttcaaggcagagaaaaggaggcagtgctgctgtccctggttagatct
aatagaaaaggagaagttggatttcttgcggaggacaggaggatcaacgtggcagtaaca
cgtgccagacgccagcttgtagtggtatgcgattcccagactgtccgaaaccatgaattt
ctcagaagcttggttgtctacatgtctgagcacggggaggttcgtactgccttcgagtac
ctagaggacctggtgcctgaaaactaccagcgcgattttaaagacaaacagaataacatt
aaagtatcttccaccaatacaaaggcaagaaaccaacaaggcgaaaggggtgagaagaag
cagaataaagtttctgagagcaaaagcaaaggaaatggccaatcaaaggatgataatgta
aagtcagggcttcccaagccaaaagcagatgatcaacttgagtctgaaatgaagaaagca
gagatgaggcagcagttgcttaacttcctggacaaccaaggtcagacagagcttcagttt
ccttcctctctgaattcacatgaacgcctgctggtccaccaactctgtgaagagctggaa
ctaaagcatgtgagcaagggaacgggaaaacagcgccatatcactgtttccaaaccagtg
gcagagccagaggagagaccggaagaggaatccgagtccacaaagacagaaatccagatt
ccagaggaactaactgaaaaggaatccgacacacaaccattaaagtctgctctagatttg
aaaagcttgcatttggagcgtatgcgccgggagcgagaaaaacgggaggagaaaattcag
aacaaaagactggagacagagcttaaagacatcaaaggcccatccgcgaaaaagaacaaa
gacgtaacaaaaggaaagggtaaaaagaaagcaggggctgtggacattgctgcagctgct
acagctgatgatgatttcgatgcactcattgatgctgtggtgaaagcagaaagcgtgtgt
ggcttcatgaagtgtaaagccagtgtgctcacactgggacagctgtgtgtctactgtaac
agacagtactgcctgagtcaccacatacctgaggtccatggatgtggagacaaagcaaag
gctcaggctcgcatgaggataagcaaagagggagtgctgtatgctggaagcggacagaag
gacaagtccatggatccaaacaaaaaagcatacctgcaacgcaaactagactctaaactc
aaagacatggcatcccaaagaaaatccaaatcaaaagataaagaaccctga
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