KEGG   Ictalurus punctatus (channel catfish): 128629324
Entry
128629324         CDS       T04658                                 
Name
(RefSeq) bromodomain and WD repeat-containing protein 3 isoform X1
  KO
K11798  bromodomain and WD repeat domain containing protein 1/3
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ipu04121]
    128629324
Ubiquitin system [BR:ipu04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     128629324
SSDB
Motif
Pfam: WD40 WD40_Prp19 Bromodomain WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_EIPR1 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_DCAF12 Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_HPS5 WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 128629324
NCBI-ProteinID: XP_053532830
UniProt: A0A9F7R2X8
LinkDB
Position
28:complement(1269376..1286743)
AA seq 1768 aa
MASEPCSQLEAELYFLIVRFLQSGPCQKSAQTLREELEEFEIIPERWSWDGKRYKRNFQD
WVALNQHVPADYLLRVCEQLCPLVDAHIPPSVPGLRSLLGSGRQSLLRTAKSSSHTVWTG
SAVAALHRGRPPEPPINFPKPPNIVSIMGGRQATGVARFGHALPSCTYQHMKMHRRILGH
LSSVYCVAFDRTGRRIFTGSDDCLVKIWATDNGRLLTTLRGHAAEISDMAVNYENTLLAS
ASCDKVIRVWCLRTCAPITVLQAHTASITSIQFSPFSFGSTRYLASTGADGMVCFWQWNS
LSMKFSEKPVKFAERSRPGVQISCCSFSTGGMFLATGGTDHVIRVYYLGAETPVKLSDLD
SHTDKVIAVQFSNNSDSLRFVSGSRDGTARIWHYQQLEWKSVVLDMSTRLPGSAAASGED
KTTKLVVTMVAWDRGDRSVVTAVSNLLLKVWSSTNGQLLHVLSGHDDEVFVLEPHPFDWR
IMLSAGHDGNIYIWDLSRGNKIRNFFNMIEGQGHGAVFDCKFSADGQHFACTDSHGHLLI
FGFGCSRPYEKIPDQMFFHTDFRPLIRDSNNYVLDEQTQQAPHLMPPPFLVDVDGNPHPP
SFQRLVPGRENCNEEQLVPQLGYMANGDGEVVEQVIGQQTAEEGQEESPLDNLIRQLQHQ
QDGRLGSGNPAAGGEAEGGGPVPVLSPPNVGLRRSGQVEGVRQMHGNAPRSQMATERDLL
VWSRRVVVNEVPSGVLRIMEESRLAKGELERALYTMEKKKKPAHATRTEPVDVSGRSLRR
PQRKQQQKRHAYHTRSTRERRRARTLMDSREDSLSESDSEAEQEEEQNENSDASSEGDAQ
WENASSSSDSSSEYSDWTADAGINLQPPKRLTRRPARIAGSSSSEDEGEGRREGEERRKK
KKKEEDEDEEEKKKKPKQTKQKTVPAGEPVSEEWLPPPWIMETIPRRSPFLPQMGDELIY
FRQGHQAYVRAVRRAKAYSINPQKQPWNRLDLRDQECVKVVGIKYEVGPPTLCCLKLAFL
DPLSGKMTGESFSLKYHDMPDVIDFLVLQQFYNEAKERNWQPGQRFRSIIDDAWWFGSVE
NQQPYQHEYPDSLFQCYAVRWDNSEREKMSPWDMEPIPDEAPLPDEIGDSVPVTEAELQS
LLYQPQDGEWGAHTRDEECERVIDAIDQLFTMDIAKAFSCPVDLRDYPLYCTVVAYPTDL
STIRLRLLHRFYRRISALMWEVRYIEHNARTFNEPHSPIVTAAKAVTDILLRFIGDQSCT
DISELYDKIKTELSSAAEEEEDVDVDSDTPGTSTGQKKRGVVLDVRAWYGQCKELLRRMI
ASPDSEPFRQPVDLFTYPDYRDIIDTPMDLGTVMETLSGGNYENPIECAKDVRLIFSNSK
AYTPNKKSRIYSMTLSLSAFFEHQIISIISDYKVAIQNQRRCQQRLSYSKRLQNTMPESP
KGKPKSVKKTKTPQQPNRTHSRHPPEDSNLALDDEDSQPSSSSQSALTSSSSGQPSSNRV
TRSRSLSRRADAHCNGPLTNGGRRSRRQPGQGDSSDSESSESSSSSSSSSSSSSSSSSSS
SSSSESEASDADMAGFTEGGDHDYSKASRLSLARKTKMAAAGFAANGKRKRRVREEEATE
RLKRARREHTQVQATRSEEDEDEDEDEENGEGEEQEHEDEEEEVVEEGEELEEEEEEEEE
EEEEEVEEEEEMSPQPQLPARGQRSNQRTMKAGRVNTRNQGRRTVVYNDDSEDDAPAADP
LNLGTSRSGRIRRMTERARVSHLMGWSH
NT seq 5307 nt   +upstreamnt  +downstreamnt
atggcgtcagaaccgtgttcacagctcgaagccgaactctatttcctgattgtcagattt
cttcagtctggaccgtgccaaaaatcagcacagactctgcgggaggagctggaggagttc
gagatcatcccggagcgctggagctgggacggaaaacggtacaagagaaacttccaggat
tgggtggcactgaatcagcacgtcccagcagattacctcttgcgtgtgtgtgagcagttg
tgtccgttggtggacgcacacatccctccgagtgtccccggactccgcagtctgctgggg
agcggccgccagtctctactgcgtactgccaagagttcttctcacacagtatggacaggt
tctgctgtagctgctctgcacagggggcggccccccgaaccgccaatcaacttccccaag
ccgccaaatatcgtgtcaatcatgggcggtcgccaggcaaccggggtggcccgctttgga
cacgccctcccgtcctgcacctaccagcacatgaagatgcacaggaggattctgggacac
ctgtcctctgtgtactgcgtggccttcgaccgaacgggccgccgcatctttacgggttca
gacgactgcctagtgaagatctgggcgacggataacgggcgtctcttgacgacgctgcgt
ggtcacgcggccgagatctccgacatggcggtgaattacgagaacacgctcctggcttcg
gccagctgtgacaaggtgatccgagtgtggtgcctccgaacctgcgcacccatcactgtc
ctacaggcacacaccgcctccatcacctccatacagttctctccattctctttcggttct
acgcgctatctggcctccacaggagccgacggcatggtctgcttctggcagtggaacagc
ctcagcatgaaattctccgaaaagccagtgaagttcgccgagcgttctcgtcctggggtt
caaatatcctgctgctccttcagtaccggtgggatgtttcttgccactggagggacggat
catgtgatcagggtgtattatctgggcgctgagactcctgtgaagttatcggacctggac
tcgcacacggataaagtgattgctgtgcagttctccaacaacagcgacagtctccgcttt
gtgagcggcagtcgggacggaacagcgcgcatctggcactaccagcagctggagtggaag
agcgtggtgctggacatgagcaccagactgcctgggagcgccgccgcatcaggggaggac
aagaccaccaagctggtggttaccatggtagcatgggaccgcggtgaccgatcggtcgtc
accgctgtctccaacttactcctcaaagtctggagctccacaaacggccagctgctacac
gtgctctcgggtcacgacgatgaggtctttgtcctggagccccaccccttcgactggcgc
atcatgctgtcggccggccacgacggcaacatctacatctgggacctcagcagaggcaac
aaaatacgcaacttcttcaacatgatcgaaggtcagggtcacggggcggtgttcgactgc
aagttctcggctgacggtcagcactttgcctgcacggactcgcacgggcatctgctcatc
ttcggcttcggctgcagccgaccctacgagaagatcccagatcagatgttcttccacacg
gatttccgtccgttgatccgggattccaataactacgtcctggacgagcagacgcagcag
gcgccgcacctcatgccgccaccattcctcgtggacgtggacgggaacccgcaccctccg
agcttccagcgcctcgtacccggccgagagaactgcaacgaggagcagctggtgcctcag
ctgggctacatggctaacggtgacggagaggtggtggagcaggtgattggccagcagacg
gcggaggagggtcaggaagagagcccgttggacaatttgatccggcaacttcagcaccag
caggacgggagactcggctcaggaaacccggctgcaggtggtgaagccgaaggcggtggt
cctgtccccgtcctgtcgccccctaacgtcggcctgcgcaggagcgggcaggtggaaggg
gttcgacagatgcacggcaacgccccccgcagtcagatggccacggagagagacctgctg
gtgtggagccgccgcgtcgtcgtcaatgaagtcccttcaggagtgctccggataatggag
gagagtcgactggctaaaggagaactggagcgagctctctataccatggagaagaagaaa
aaacctgcccacgctactcgaacagagccggtcgacgtttcggggcgctctctgcggaga
cctcagagaaaacagcagcagaagagacacgcgtatcatacgcggtcgacgcgggagagg
aggcgtgcgcgtacgctgatggactcgcgcgaggacagcctcagcgagtcagacagcgag
gcagagcaggaggaggaacagaacgagaacagcgacgcgtcctccgaaggcgacgctcag
tgggagaacgccagcagctcaagtgactcctccagcgagtactccgattggacggcggac
gcgggtatcaacctccagccgcccaaacgactcaccagaaggccggctcgtatcgccggg
agcagcagctcagaggacgaaggggaggggcgaagagagggggaggagcgtcgcaagaag
aagaagaaggaggaagacgaggatgaggaggagaagaaaaagaaacccaaacaaactaaa
cagaagactgttcctgccggtgagccagtgagtgaagaatggcttcccccgccctggata
atggagacgatacccaggagatctccattcctacctcagatgggggacgagttgatctat
ttccggcagggtcaccaggcgtatgtccgggcggtgcgtcgtgccaaagcctacagcatt
aaccctcagaaacagccctggaacagactggacctcagggatcaggagtgtgtgaaggtg
gtgggtataaagtatgaggtggggccgcccacactctgctgcctcaaactggccttcttg
gacccgctctcagggaagatgaccggcgagtccttcagcttgaagtatcatgacatgcct
gatgtcattgattttctggtgctacaacagttttacaacgaggccaaagaacgcaactgg
caaccgggtcagcgtttcagaagtattatagatgacgcctggtggtttggatcagtggag
aatcagcagccgtaccagcacgagtatccagacagccttttccagtgctacgctgtcagg
tgggacaacagtgagagagagaaaatgagcccctgggacatggagcccatacctgatgaa
gctccgcttcccgacgagatcggcgacagcgtcccggtaacggaggcggagcttcagtca
ctactctaccaaccgcaggacggagagtggggcgcgcacacacgcgacgaagagtgtgag
agagtcatcgacgccatagaccagctgttcacaatggacatagcgaaggcattctcctgt
ccagtggacctgagggattatcctctgtactgcactgtggtggcgtatcccactgacctc
agcaccatcagactgagactattacaccgcttctacaggaggatttcggcgctgatgtgg
gaggtccgttacatcgagcacaacgccagaacgtttaacgagccacacagccccatcgtc
acggcggcgaaagctgtcactgacatcctgctgcgctttattggggatcagagctgtact
gatatctcggagctatacgataagatcaaaacagagctcagcagtgctgctgaagaagag
gaggacgtcgacgtggactctgacactccgggcacgtcaaccggacagaagaagcggggc
gtggtgctggacgtgcgagcctggtacggtcagtgcaaagagctgctcaggaggatgatc
gccagccccgactccgaacccttccgccaacccgtagacctcttcacctacccggactac
agagacatcatagacacaccgatggacctgggcacggtgatggagactctgtcggggggg
aattacgagaatcccatcgagtgcgccaaagacgtgcggctcatcttcagcaactccaaa
gcgtacacgcccaacaagaagtcccggatctacagcatgactctgagtttgtctgcgttc
tttgagcaccagatcatctccatcatctcggattacaaggtggccatccagaaccagaga
cgctgccagcagagactcagctacagcaagagactacaaaacaccatgccagagagcccc
aaagggaagcccaagtcagtgaagaaaactaaaacaccccagcagcccaacaggacgcac
tcacgacatccgcctgaagattcgaacctcgcactcgatgatgaagatagtcagccttca
tcttcctcacagtccgcattgacatcctcgtcgtcgggtcagccgtcgagcaacagagtc
acacgcagccgatctctgagcaggagagcagacgctcactgcaacgggccgctgactaac
ggaggtcggaggtcacgcagacagccgggacaaggagactcttcggactccgagagctcg
gaatcatcttcatcatcgtcgtcttcgtcgtcctcctcttcctcctcctcgtcttcatcg
tcctcttcctctgagagcgaagcgagcgacgccgacatggccggcttcaccgagggcggg
gatcacgattacagcaaagcgtcgcgtctctccctggcgcgcaagaccaagatggctgcc
gccggcttcgctgctaacggcaagcggaaaagaagagttagagaagaggaggcgacggag
cgcctcaaacgcgcgcgcagggaacacacgcaagtccaagccacccggagcgaggaggac
gaggatgaggacgaagatgaggaaaacggagagggtgaagagcaggagcatgaggacgaa
gaagaagaagtagtagaagaaggggaggagctagaagaggaggaggaggaggaagaagaa
gaagaagaggaggaagtggaggaggaagaggaaatgagtccacagcctcagctccctgcc
agaggtcaaaggtcgaatcagaggacgatgaaagcggggcgtgtaaacacccgtaaccaa
gggagacggaccgtagtctataacgacgactctgaggacgatgctcccgccgccgacccg
ctcaatctgggcacgtcgcgttccggaaggatccgccgcatgaccgagcgagccagggtc
agccatctgatgggctggtcacactga

DBGET integrated database retrieval system