Ichthyobacterium seriolicida: JBKA6_0821
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Entry
JBKA6_0821 CDS
T05228
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
ise
Ichthyobacterium seriolicida
Pathway
ise03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ise00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JBKA6_0821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ise03021
]
JBKA6_0821
03400 DNA repair and recombination proteins [BR:
ise03400
]
JBKA6_0821
Enzymes [BR:
ise01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JBKA6_0821
Transcription machinery [BR:
ise03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JBKA6_0821
DNA repair and recombination proteins [BR:
ise03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JBKA6_0821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
BAV94834
UniProt:
A0A1J1DY67
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All DBs
Position
1092319..1093302
Genome browser
AA seq
327 aa
AA seq
DB search
MGILNFQKPDEVLMIDSDEFQGRFEFKPLEPGYGLTVGNAIRRVLLSSLEGYAITSLKMS
GIAHEFSSIKGVMEDVTEIVLNLKQIRLKQIVDIDTEQVNISISGKEKILSEDIGSFLSN
FEVINKDLLICNLDPSVKLEFQITIEKGRGFVSSEENKRVPVSEGVIVMDSVFTPIKNVK
YSIENFRVEQKTDYEKLLMDIKTDGSITPKDALKEASKILIHHFALFSDEKISTEADGKR
ESDVYDDTVLRMRKLLKTNLTDLDLSVRALNCLRTAEIDTLEQLVGFREDDLMKFRNFGR
KTLVELQSILDVKGLSFGMDLSIYGLK
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgggaattttaaattttcaaaaaccagatgaggttttaatgattgattctgatgagttt
cagggtcgttttgagtttaaacctttggagcctggttatggtttaaccgtaggtaatgct
attagaagggtattgttgtcttcgttggaaggatatgctatcacttctttgaagatgtct
ggaatagctcatgagttttcttctataaaaggtgttatggaggatgtgaccgagatagtt
ttaaatctcaaacagattagattaaagcaaatagttgatatagatactgaacaagtaaat
atatctatctctggaaaggaaaagattttatctgaagatataggttcatttttatctaat
tttgaagttataaacaaagatctattgatatgtaatctagatccaagtgtaaagttagaa
tttcagataaccatagagaaaggtagaggcttcgtgtcttcggaagagaataagagggta
cctgtatctgaaggtgtaatagtcatggattcagtttttactcctataaaaaatgtaaaa
tacagtatagagaactttagggtagagcaaaagactgactatgaaaaattacttatggat
atcaagacagatggttctattactccaaaggatgctttaaaagaggcatctaagatactc
attcatcattttgctttgttttcggatgaaaaaatatctactgaggcagacggcaaaaga
gaatcagatgtatatgatgatactgtacttcgtatgcgtaaattactcaagactaatcta
acagatttagatttgtcggtaagagcattgaactgtcttagaaccgctgaaatagataca
cttgaacagctagtaggttttagagaggacgaccttatgaaattcagaaattttggtaga
aaaacattagttgaattacagtctattttggatgttaagggcttgagttttggaatggat
ttgagcatatacggtttaaaataa
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