Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101964150
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Entry
101964150 CDS
T10664
Symbol
Cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X5
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101964150 (Cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iti03019
]
101964150 (Cnot1)
Messenger RNA biogenesis [BR:
iti03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101964150 (Cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101964150 (Cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
101964150
NCBI-ProteinID:
XP_005318309
UniProt:
A0A287DFH4
LinkDB
All DBs
Position
Unknown
AA seq
2376 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKPSLAGQVNTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVSHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7131 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaattaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttctcatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagactcagtttctgattcaggagtgtgcgtcg
ctgattacaaagccaaattttatctcaacattgtcctatgccattgataatccattgcac
tatcagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaggtaatttttggtcttgccctcttgaattcttccagctcagat
ctcagaggttttgctgcccagtttatcaaacagaagcttccagatcttctgcgttcctac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacacctcctcctctcccatctcctctttgggcagaagggagcctttggagttggacag
gaacagatagacgcttttctcaagacactgcgcagagattttcctcaagaacgctgtcct
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacaggatcctg
cctgattccggaggggttgctaaaaccatgatggagagctctttggctgatttcatgcaa
gaagtaggctatggcttttgtgcaagtattgaagaatgtcgcaacataatcatgcagttt
ggtgttcgggaggtcacagctgcccaggttgcaagggttttaggaatgatggctcgaact
cattcaggattaacagatggtattccattacagagtatctctgcacctggcagtgggatc
tggagtgatgggaaagataaaagtgatggagctcaggcacacacatggaatgtggaagtc
ttgattgatgttcttaaagaactgaacccgagtttgaacttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgacagtaaaggacttcataatgtggtttatggc
attcaaaggggtttgggtatggaagtattccccgttgatttcatatatagaccttggaaa
catgcagaaggccagctatccttcattcagcattccctgataaatccagagattttctgt
tttgctgactatccttgtcatactgttgccactgatattttgaaagcaccaccagaggat
gacaatcgtgaaattgccacatggaagagcttggatttgattgaatctctattgaggctt
gcagaggttgggcagtatgagcaagtcaaacagctcttcagcttccctatcaaacactgt
ccagacatgctggtattggccttactacaaatcaacacttcctggcataccttgcgccat
gaactcatctccactctgatgccaattttccttggaaaccatcctaactctgccattatt
ctgcactatgcgtggcatgggcagggacagtctccctcaattcgccaactcattatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggccttgtctatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcactagcttcacgtcgtgaatacctcaaacttgacaagtgg
ctcacagataaaattcgggaacatggggagccttttattcaagcatgcatgactttttta
aaaagacggtgcccttctattttgggtggacttgccccagagaaagaccagcccaaaagt
gctcaacttcctcctgaaactctggcaacaatgttggcttgtctgcaggcttgtgcgggg
agtgtttctcaggaattatcagagaccatcctcaccatggtagccaattgcagtaatgtt
atgaataaggcccgacagccaccacctggagttatgccaaaaggacgccctcctagtgct
agcagtttagatgccatttctcctgttcagattgaccctcttgctggaatggcatctctt
agtataggtggttcggctgcccctcacacccagagtatgcagggctttcctccaaatttg
ggttctgcattcagtacccctcagtcaccagcaaaagcatttccacccctttcaacccca
aatcaaacaacagcgttcagtggtattggaggactttcatcacagcttccagtaggtggt
cttggcacaggcagcctgactggtataggaaccggggctcttggactccctgcagtgaat
aatgacccttttgtacagagaaaactgggcacctctggactgaaccagcctacattccag
cagagtaagatgaaaccttcggacttgtctcaggtgtggccagaggcaaatcagcacttt
agtaaagagatagatgatgaagcaaacagctatttccaacgaatatataatcacccacca
catccaaccatgtcagttgatgaggtattagaaatgctacaaagatttaaagactctact
ataaaaagggaacgagaagtatttaactgtatgctaaggaacttgtttgaagaatatcgg
tttttcccccagtatcctgataaagagttacatataacagcctgcctgtttggtggcata
attgaaaaaggactggtcacttacatggcactgggtctggccctgcgatatgttcttgaa
gccttacgcaagccttttggatctaaaatgtattattttgggatagctgcactagataga
tttaaaaataggttgaaggactatccccagtattgtcagcacttggcttctatcagtcac
tttatgcagtttccacatcatttacaagagtatatcgaatatggacaacagtctagagac
cctcctgtgaaaatgcagggctccatcaccacccctggaagtattgctttggcccaggcc
caggcccaggcccaggttccagcaaaaccttctcttgctggtcaggttaacactatggta
accacttcaacaactacaactgttgctaaaacggttacagtcaccaggccaactggagtc
agttttaagaaagatgtgccaccttctatcaatactacaaatattgatacgttgcttgtg
gccacagaccaaactgagagaattgtggagcccccagaaaatatccaagagaaaattgct
tttatcttcaacaatctctcacagtcaaatatgacacaaaaggttgaagaattaaaagaa
actgtgaaggaagaatttatgccttgggtttcacaatatctagttatgaagagagtcagt
attgaaccaaacttccacagcctttattcaaacttcctggatacattgaagaatcctgaa
tttaacaagatggttctgaatgagacctatagaaacatcaaagtgctcctgacctctgat
aaagctgcagccaatttctcagatcgttctttgctgaagaacttgggacattggctggga
atgatcacattagctaaaaataaacccatcttacatactgacttggatgtgaaatctttg
ctgctagaggcttatgttaaaggacaacaggagttgctctatgtagtaccctttgttgcc
aaagtcctagagtccagcattcgtagtgtggtttttaggccaccaaacccctggacaatg
gctattatgaatgtattagctgaactacatcaggaacatgacttgaagttaaacttgaag
tttgagattgaggtgctctgcaagaaccttgcattagacatcaatgagctgaaacctgga
agcctcctaaaggataaagatcgcctaaagaacttagatgaacaactctctgctccaaag
aaagatgtcaagcaaccagaagaactccctcccatcacaaccacaaccacttctacaaca
cctgctaccagcactacctgtacagccacagttccaccacagccgcagtacagctaccat
gacatcaatgtctattccctcgcaggcctggcaccacacattactcttaacccaacaatt
ccattatttcaggcccatccacagttgaagcagtgtgtgcgtcaagcaattgaacgagct
gtccaagagttggtccatccagtggtggatcgatcaattaagattgccatgactacttgt
gagcaaatagttagaaaggattttgccctggattctgaggaatctcgaatgcgaatagca
gctcaccacatgatgcgaaatttgacagctggaatggctatgattacttgcagggaacct
ttgctgatgagcatatctacaaacctaaaaaacagttttgcttcagcccttcgtactgca
tccccacaacaaagagaaatgatggatcaggcagctgctcagttagctcaggacaattgt
gaattagcttgctgttttattcagaagactgcagttgaaaaagcaggccctgagatggac
aagagattagcaactgaatttgaattgagaaaacatgccaggcaagaagggcgcagatac
tgtgatcctgtggtattaacctatcaggctgaacggatgcccgagcaaatcaggctgaaa
gttggtggtgtagacccaaagcagttggctgtttatgaagagtttgcacgcaatgtgcca
ggctttttgcctacgaatgacctcagtcagcccacaggatttttagctcaaccaatgaag
caagcttgggcaacagatgatgtagctcagatttatgataagtgcattaccgaactggag
cagcacttacatgccattccaccaactctggccatgaacccgcaagctcaggctcttcga
agtcttttggaggttgtagtattatctcgaaactcccgggatgccatagctgctcttgga
ttactccagaaggctgtagagggattattagatgccacaagtggtgctgatgctgacctt
ctgctgcgctatagggaatgccacctcttggtactaaaagctctacaggatggtagggct
tatggatctccgtggtgcaacaaacagatcacaaggtgcctaattgaatgtcgagatgaa
tacaaatataatgtggaggctgtggagttgctaattcgcaatcatttagttaacatgcag
cagtatgatcttcacctagctcagtcaatggagaatggtttaaactacatggccgtggca
tttgctatgcaattggtaaaaatccttctggtggatgaaaggagtgtttcccatgttact
gaggcagatctgttccataccatcgaaaccctcatgaggatcaatgctcattccagaggc
aacgctccagaaggattgccccagctgatggaagtagtgcgatccaactatgaagccatg
attgatcgtgctcatggaggccctaactttatgatgcattctgggatctctcaagcttca
gagtatgatgatcctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctctaccattcagcagctgctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacagatgcaccagcaaggaatactgaagactgatgacctcataacaaggttctttcgt
ctatgcactgaaatgtgtgttgaaatcagttaccgtgctcaagctgagcagcagcacaat
cctgctgctaatcccaccatgatccgagccaagtgctatcacaacctggatgcctttgtc
cgactcattgcactgctagtgaaacactcaggggaggccaccaatactgtcacaaagatt
aatctgctaaacaaggtccttggtatagtagtgggagttctcctacaggatcatgatgtt
cggcaaagtgaatttcagcagcttccttaccatcgaatttttatcatgctgctcttagaa
ctcaatgcacctgaacatgtgttggaaaccattaatttccagacactcacagctttctgc
aatacattccacatcttgaggcctaccaaagctcctggctttgtatatgcctggcttgaa
ctgatctcccatcggatatttattgcaagaatgctggcacatacgccacagcagaaggga
tggcccatgtatgcacagctacttattgatttattcaaatatttagcgcctttccttaga
aatgtggaactcaccaaacccatgcagattctctacaagggtactctaagagtgctgctg
gttcttttgcatgattttcctgagttcctttgtgattaccattatgggttctgtgatgtg
atcccacctaattgtatccagttaagaaatttgattttgagtgccttcccaagaaatatg
aggctcccagaccctttcactcctaatttgaaggtggacatgttgagtgaaattaacatt
gcacctcggattcttaccaatttcactggagtgatgccacctcagttcaaaaaggatttg
gattcctatcttaaaactcgatcaccggtcacttttctgtctgatctgcgcagcaatcta
caggtatccaatgagcctggcaatcgctacaacctccagctcatcaatgcactggtgctc
tatgtagggactcaggctattgcacatatccacaacaagggcagcacgccttcaatgagc
accatcacccactcagcacacatggacatcttccagaacctggctgtggatttggacact
gagggtcggtatctcttcttgaatgcaattgcaaatcagctgcggtacccaaatagccac
actcactacttcagctgcaccatgctctacctttttgcagaggccaacactgaagctatc
caggaacagatcacaagggttctgttggaacggttgattgtaaataggccacatccttgg
ggtcttcttattaccttcattgaactaattaaaaatccagcgtttaagttctggaaccac
gaatttgtacactgtgccccagaaattgaaaagttattccagtcggttgcacagtgctgc
atgggacagaagcaggctcagcaagtaatggaagggacaggtgccagttag
DBGET
integrated database retrieval system
