Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101969216
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Entry
101969216 CDS
T10664
Symbol
Clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101969216 (Clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
iti03019
]
101969216 (Clp1)
Enzymes [BR:
iti01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
101969216 (Clp1)
Messenger RNA biogenesis [BR:
iti03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101969216 (Clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_18
TniB
ATP_bind_1
MMR_HSR1
AAA_22
AAA_16
nSTAND3
CbiA
Motif
Other DBs
NCBI-GeneID:
101969216
NCBI-ProteinID:
XP_005331641
UniProt:
I3N8Y4
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAG
AKVAVFTWHGCSLQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgggagaggaggccaatgatgacaagaagccaacaactaaatttgaactagagcgagaa
acagaacttcgctttgaggtggaggcttctcagtcagttcagttggagttgctgactggc
atggcagagatctttggcactgagctgactcgaaacaagaagtttacttttgatgctggt
gctaaggtggctgttttcacatggcatggctgttctctgcaactgagtggccgcactgag
gtggcttatgtttccaaggacacccctatgttgctttacctcaacactcacacagccttg
gaacagatgcgaaggcaggcagaaaaggaagaagaacgaggccctcgagtgatggtagtg
ggccccactgatgtgggcaagtccacagtatgtcgcctgctgctcaactatgcagtgcgt
ttgggccgtcgtcctacttatgtggagctggatgtaggccagggctctgtgtccattcct
ggtaccatgggggctctctacattgaaaggccagcagatgttgaagagggtttctctatc
caggcccctctggtgtatcattttggctccaccactcctggcactaacatcaagctttat
aataagattacatcccgtttagcagatgtgtttaaccagaggtgtgaggtgaaccgaagg
gcatctgtgagtggctgtgtcattaacacctgtggctgggtcaagggctctggctaccag
gccttggtgcatgcagcttcagcttttgaggtggatgtagttgtggttctagatcaagaa
agactgtacaatgaactgaaacgggatctgcctcattttgtacgtactgtgctgctccct
aagtcagggggtgtggttgaacgctccaaagacttccgccgggaatgtagggatgagcga
atccgtgagtatttctatggattccgaggctgtttttatccccatgccttcaatgttaaa
ttttcagatgtcaaaatctacaaagttggggcgcctactattccagactcctgtttgcct
ttaggcatgtctcaggaagacaatcagcttaagctagtacctgtcacccctggccgagac
atggtacaccacctattgagtgttagcactgctgagggtacagaggagaacctttctgag
acaagtgtggctggcttcattgtggtgaccagtgtggacctggagcatcaggtatttact
gtcctgtctccagcccctcgcccactgcctaagaacttccttctcatcatggatatccgg
ttcatggatctcaaatag
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integrated database retrieval system
