Ictidomys tridecemlineatus (thirteen-lined ground squirrel): 101976372
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Entry
101976372 CDS
T10664
Symbol
Col9a1
Name
(RefSeq) collagen alpha-1(IX) chain
KO
K08131
collagen type IX alpha
Organism
iti Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Pathway
iti04151
PI3K-Akt signaling pathway
iti04510
Focal adhesion
iti04512
ECM-receptor interaction
iti04820
Cytoskeleton in muscle cells
iti04974
Protein digestion and absorption
iti05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
iti00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101976372 (Col9a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101976372 (Col9a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101976372 (Col9a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101976372 (Col9a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101976372 (Col9a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
101976372 (Col9a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
iti00535
]
101976372 (Col9a1)
Proteoglycans [BR:
iti00535
]
Extracellular matrix (ECM) proteoglycans
Others
101976372 (Col9a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Toxin_R_bind_N
Motif
Other DBs
NCBI-GeneID:
101976372
NCBI-ProteinID:
XP_005334482
UniProt:
I3M5I0
LinkDB
All DBs
Position
Unknown
AA seq
921 aa
AA seq
DB search
MKNRWKIPVFFFVCVFLGSWASAAVKRRPRFPVNSNSNGENELCPKIRIGQDDLPGFDLI
SQFQVDKAASRRAIQRVVGSTSLQVAYKLGNNVDFRIPTRHLYPSGLPEEYSFLTTFRMT
GSTLEKNWSIWQIQDSSGKEQVGVKINGQTQSVAFSYKGLDGSLQTAAFSNLPSLFDSQW
HKIMIGVERSSATLFVDCNRIESLPIKPRGQIDVDGFAVLGKLADNPQVSVPFELQWMLI
HCDPMRPSRETCHELPVRITPTQTTDQRGPPGEQGPPGPPGPPGVPGIDGIDGDRGPKGP
PGPPGPPGEPGKPGAPGKPGTPGADGLTGPDGSPGSVGPRGQKGEPGVPGSRGFPGRGIP
GPPGPPGTAGLPGELGRVGPIGDPGKRGPPGPPGPPGPSGTIGFHDGDPLCPNSCPPGRS
GYPGLPGMRGHKGAKGEIGEPGRQGHKGEEGDQGELGEVGAQGPPGAQGLRGITGTVGDK
GEKGARGLDGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRGAQGPRGIPGPPGPKGDTGLP
GVDGRDGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGNTGAPGKPGQL
GNSGKPGQQGPPGEVGPRGPRGLPGSRGETGPVGSPGLPGKPGSFGSPGLPGLPGPPGLP
GMKGDRGVFGEQGPKGEQGASGEEGEAGERGDLGDIGLPGPKGSMGNPGEPGLRGPEGSR
GLPGAEGPRGPPGPRGVQGEQGATGLPGIQGPPGRAPTDQHIKQVCMRVIQEHFAEMAAS
LKRPDSGASGLPGRPGPPGPPGPPGENGFPGQMGIRGLPGIKGPPGALGLRGPKGDLGEK
GERGPPGRGPKGLPGAIGLPGDPGPASYGRNGRDGERGPPGVAGIPGVPGPPGPPGPPGF
CEPASCTLQAGQRAFSKGPDQ
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaccgctggaaaattccagtatttttctttgtatgcgtttttctgggatcctgg
gcatctgcggctgttaagcgtcgcccaagattccctgtcaattcgaattctaatggggaa
aatgaactctgtcccaagatcaggattggccaagatgacttgccaggatttgacctgatt
tctcagttccaggtagataaagcagcatctagaagagcaatccagagagtggtaggatca
acttcattacaagtggcttacaagttgggaaataatgtagatttcaggattcccaccagg
cacttatatcccagtggactgcctgaagaatactcctttttaactacttttcggatgact
ggaagcacacttgaaaagaactggagcatttggcagattcaggattcctctgggaaggaa
caagttggagtgaagattaatggccaaacacaatcagttgcattttcatataagggcctg
gatggaagtctccaaacagcagccttttcaaatttgccttccttgtttgattcccagtgg
cataagatcatgattggcgtggaaaggagtagtgctactctttttgttgactgcaacagg
attgaatccttacctatcaagccaagaggccaaattgatgttgatggctttgctgtgctg
ggaaaacttgcagataatcctcaagtttctgttccatttgaacttcagtggatgctgatt
cattgtgacccaatgagacccagcagagaaacttgtcatgagctaccagtcagaattacg
cccacccagactaccgaccagagaggtccaccaggtgagcaggggcctcctgggcctccc
gggccccctggagttccgggcatcgatggcatagatggtgatcgaggtcctaagggtccc
ccaggcccaccgggtcctcctggagaaccaggaaagccaggagctccgggaaagcctggc
acacctggagctgatggtttaacaggacctgatggatcccctggctctgttggtccaagg
ggacaaaaaggagaacctggagtacctggatctcgtggatttccaggtcgtggcattcct
ggaccccctggtcctcctgggacagcaggtcttcctggagaacttggccgtgtaggacct
attggtgaccctgggaaaagaggaccacctggccccccaggccctccaggacccagtgga
acaattggctttcatgacggagatccactgtgtccaaattcctgtccaccaggtcgctct
ggatatccaggccttccaggcatgaggggccataaaggtgctaaaggagaaattggtgaa
ccagggagacaaggacacaagggtgaagaaggcgaccagggagaactgggagaagttgga
gctcaaggacctccaggagcacaaggtttgagaggcatcactggtacagttggggacaaa
ggagaaaaaggtgctcggggcttagatggagagcctgggcctcagggtctgcctggtgca
cctggtgatcaaggacagcgaggacctcctggtgaagcaggccccaagggagatagaggg
gctcaaggtcctagaggaattcccggaccccctggacccaaaggagacacgggcttgcca
ggtgtggatggccgagacgggatacctggaatgccaggaacaaagggtgaaccagggaaa
cctggacctcctggtgatgcaggattgcaggggctaccaggtgtacctggaattcctggt
gcaaagggtgttgctggtgaaaagggaaacacaggtgctccagggaagcctggtcaattg
ggaaattcgggcaaaccgggccaacagggtcctccaggagaggtgggacctcgagggccc
cggggccttcctggcagcagaggggaaacaggacccgtaggatccccaggcctaccaggt
aaaccgggatcttttggtagccctggcctccctggcttgcctgggcctcctggacttcct
ggaatgaaaggagacaggggtgtatttggtgaacaaggtccaaagggtgaacagggtgct
tctggtgaagaaggtgaagcaggagaaaggggtgaccttggagatataggattaccaggc
ccaaagggatctatgggtaaccctggggagccaggattgagaggacctgaaggaagtcgg
gggcttcctggagcagaaggaccaagaggacctcctggaccccggggtgtgcagggagaa
cagggtgccactggcctgcctggtatccagggccctccgggtcgagcaccgacagatcag
cacattaagcaagtttgcatgagagtcattcaagagcattttgctgagatggctgctagt
ctcaagcgtccagactctggtgcctctggtctccctgggaggcctggtcctcctggcccc
cctggtccccctggagagaatggtttccctggtcagatgggaattcgtggcctccctggc
attaaaggtccccctggtgctcttggtttgaggggacctaaaggtgacttgggagaaaaa
ggggagcgtggccctccaggaagaggtcccaaaggtttgcctggagctataggtctgcca
ggtgacccaggccctgccagctatgggagaaacggccgggatggtgagcgagggcctcca
ggagtggcaggaattcctggtgtgcctggcccccctggccctcctggccctcctggtttc
tgtgagccagcctcttgcaccctgcaggctggtcagcgggcatttagcaaagggcccgat
cagtaa
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