Ipomoea triloba (trilobed morning glory): 116017841
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Entry
116017841 CDS
T07384
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116017841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116017841
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116017841
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
116017841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
RamS
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
116017841
NCBI-ProteinID:
XP_031114343
LinkDB
All DBs
Position
4:complement(1621954..1639907)
Genome browser
AA seq
2338 aa
AA seq
DB search
MVQLASTASNYIRYLLQSLNNSNSDSVFQELLQCAAYGTEGSILVLGICFDHLNIYGKDL
KNLQLEPVFASIFKYLLDKPNFSTVFFKSVRDAAICEEFLENLCTALQLTVYEKIGVGIA
LSYVEDVDIEMCGKKFFMIQLGELLSTRMSVDSVKIVQNMVLKHVDLFRNMLSLVLSKDG
VPFLSDKIHEADFSCMNFDLLNEGGEDDFDALLAEMEMEKEMSMADIMKELGYGSTASVL
QCKEILSLFLPLTEITIARILGMTVYTYSGVEDNHNIFLSFQTALGSSSLSNLPPLSSWN
TDALIDAINQLAPGLNWGIIIENLDHEGFYVPNESSFSFLMSMYRRACQDPFPLHAICGS
VWKNADGQLSFLRYAVLAPPELFTFAHSGRQLAYVDAVKEHKLQPGHANHAWLCLDLLEV
FCQLAERGHASLIRCILEYPLKHCPEVLLLGLAHINTAYNLLQHEISSIAFPTMLKSTLG
TRMILYLWNVNPSILLRGVMDAMKDDPDNINKVLDACQELKILSPVLDMIPYSFGIRLAA
LASHKEFIDLGKWLSTNLRAYKDNFCEECLKFIKEVLFSVQDDSTNHFHPPNALLNSYLE
TVSMFVKVLQSCTGSVSSFHLSEELEKLNLTCMNSNSSLENIAADSNDIEASANSYFKLL
FTEQLTIESMIQILGRFKESSEKREKLLFGVMIANLFEEYKFFPKYPENHLKTAAIIFGS
LIKHHLVTHIDLKITLKAVLDALQEPADTIMFGFGTLALEQFEDCLIELPEFCHQISQIS
HLRAAKPELIQFIEHELASVSMVNSELDEGKNYITTQFPGSIPSSQSSIELLGSSAAKTS
YLGTGHPARANSTRGFGAALNIETLVAAAERRQTPIEAPASEVQDKISFIMNNLSDANIV
VKAKEIVELLKEEHYPWFAQYIVMKRASIEPNYHALYVKLLDIVNLKALFKEVVRATYEN
CKVLLQSGLIKSSSEERSLLKNLGSWLGKITIGRDHVLLAREIDPKSLIIEAYEKGLMIA
VIPFTSKILESCQNSLAYQPPNAWTMAILGLLVEIHALPNLKMNLRFDIEVLFKNLGVDL
KDINPTSLLKERVREFEGNPDFSNKDAGSSQPQFIGDIKFGIVSNLNQGELSVDVASTSH
PGHHSQIVPQYAASLHLPSRTLTAEGKLTALVSDQHILPSAQGLLQVETPFSVVSQLPTA
ACNIEEQVIINPKLHDFGLHSHFQSVLPIAMEKAIKDIVMSIMPRSVSIATQTTKELVLK
DYSMESDETQIRNASHFMVAGLAGSLVHVSCKEALCVYISSQLRNTLEGTDIANEFLEHA
VQLVTNDNLELGCALIEQTVIKKAIQTIDETIAIELASMTHKEGHTHIDSYIYTEQCKGV
LPEALRIKSGHLSYSQQRVYEDFVRLPWKNQSIQSSNALSLGPASSNNSILSQAYVAGSA
QMSTAAIYSSDLFKAGVAAVPNYLDIASEEIDTSSSQLHSASLPPIGMGDGASSYNFEND
SIVTPFSSVLLRPIKPCNVVKGTGCSIQPRNPTLSSEDLGSSVSELSSEDLGSSVSEPSL
TTGDALDKYRIILEKLENLVTRGAKETEVQGAIAEVPAIILRCKSQDEAALAVAQKVFKG
LYENASNFEHVTVHLAMLCSICDISKVVVKELTSWVIYSDEEQKFNKDITVRLIQSDLLS
LAEYNIHMAKLIEAERNKSATEFSISLIQTLLKIDSKAVLELQDLVDALGKLAARPGSLE
SLKQLVEIAKNPSANVVASFGASGWKADNFKQSKGKKAAMLPPSGGDKSSFECVEPGPAG
FHEQVSMLFVEWYRICGSPGAKDAASAALYVSRLHRSGLLKGDDVSDCFFQKLMEISVLH
CLSSEVISLSLSQASEPKLLSFRAIDLYANLVYSVVKFYPVDQGTSKISLLSRVLAVTVK
FIQRDSDEKADSFDPRPYFRLFINWIIDLCSSDSIFDGANFQILTLFASAFHALQPLQVP
GFSFVWLELVTHRCFMPKLLAGNAQNGWPYFHRLLVDLLQFMEPFLRNAELGEAPVCLLY
EETLRVLLIVLNDFPEFLCDYHFSFCDVIPSTCIQMRNMVLSACPRNMNLPNPSAPGVKI
DLLPEIKLSPRILSEVDAALKTRQLKHDVDEYLKTRQQGSLFLRELKQTLLLSPSEAARA
GTHYNVPLINSLVLYVGILAVQQLQMTTRTATSNNNSNSQVLLLANSAPNPSTVLDAAFD
IFKTLCMELDKEGRYVLLNAIANQLRYPNNHTHYFSLTILYLFANSNQEMIQEQIIRVIL
ERLVAKPPHPWGLVVTFIELTRNKNYNFWERSFTRCSPDVENLLKSAFCKYNIIRAKN
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggtccagcttgcttcgaccgcctcgaattacattcggtatttgcttcagagcttaaac
aattccaactccgactctgtattccaagagctcctccagtgtgctgcatatggaactgag
gggagcatattggtgcttggaatctgctttgatcacctgaatatctatgggaaagacttg
aagaatttacagttggaaccagtttttgcttcaatttttaaatacttgttggataaacct
aattttagcacagttttcttcaagtcagtaagagatgctgctatttgtgaggagtttctg
gagaacctgtgtactgcattacagttgacagtatatgagaaaattggagttggtattgct
ttgtcatatgtagaagacgttgatatcgaaatgtgtgggaaaaaattcttcatgattcag
cttggggaattattgtcaactcggatgtctgtggactctgtgaagattgttcagaacatg
gttttgaagcatgtggatttgtttaggaacatgctctctcttgttctatcaaaagatgga
gtcccttttctttcagataaaattcatgaagctgacttttcatgcatgaattttgatctt
ttaaatgaaggcggtgaagatgattttgatgctcttctagcagagatggagatggagaag
gagatgagcatggctgatataatgaaggaattgggttatggatccactgcgagtgtcttg
caatgcaaggaaattttatctcttttcttgccactgacggaaattaccattgcaaggata
cttggaatgactgtttatacatactcaggcgtcgaggacaatcacaatatattcttgtca
tttcaaactgctcttggaagtagcagtctatctaatctaccaccactaagttcttggaat
actgatgccctaattgatgctattaaccagctagctcctggactaaattggggaatcatc
atagaaaatctagatcatgagggcttttatgttcctaatgaatcttctttctcctttctc
atgtctatgtatagacgtgcttgtcaggatcctttccctctacacgccatttgtggctct
gtctggaaaaatgctgatggccagctttcatttcttagatatgctgttttggcgccacca
gaattgtttacttttgctcattctgggaggcaactggcatatgttgatgctgtgaaagag
cataagcttcaacctggacatgcaaatcatgcttggttgtgtcttgatcttttggaagtg
ttctgccaattggctgagaggggtcatgcaagtcttattcgatgtattcttgagtacccc
cttaaacactgccctgaagtcctgcttcttggcttggcccacatcaatacggcatataat
ctccttcagcatgaaatctcttctattgctttccctacaatgctaaaaagtacactaggg
acacgcatgattctttatttgtggaatgttaatccaagcattttgttgaggggggttatg
gatgccatgaaggatgatcctgacaacattaataaagttttagatgcctgccaagaactg
aagattctttcaccagtgctggatatgattccttattcttttggtattagacttgctgcc
cttgcttctcacaaagaattcattgatcttgggaaatggttgagtaccaacttaagagca
tataaagataatttctgtgaggaatgccttaagttcataaaggaggtgctttttagtgtt
caagatgattctactaaccactttcacccacctaatgctcttttgaatagttatttggaa
actgtttcaatgtttgttaaggtccttcaatcatgtacagggtcagtttcgtcctttcac
ttgtctgaggaattggagaagctgaacctgacttgcatgaattctaactcaagccttgag
aatattgctgctgattccaatgatattgaagcatcagcaaattcttatttcaagctactg
tttactgaacagctaacaattgagtcaatgattcaaattcttgggcgtttcaaagaatct
tctgaaaaaagggaaaagttattatttggggttatgattgcaaatctttttgaggaatat
aaattctttcccaagtatccagagaatcacctgaaaactgctgcaattatctttggatcc
cttatcaagcatcatcttgtgactcatattgatcttaaaattactctgaaagctgtcttg
gatgctttacaagaacctgcagatacaattatgtttgggtttggaactcttgctctggaa
cagtttgaggactgtttgatcgagttgccagaattctgccatcagatatcacagatatct
catctccgtgcagctaagccagagcttattcaattcattgaacatgaacttgcaagtgtt
tccatggtgaattctgaattggatgaaggcaagaattatattactactcaatttcccggg
tccatcccgtcttcacaatcaagcattgagctactcggttcttcagcagcaaaaacttcc
taccttggcactggtcatcctgctcgggcaaactcaacaagagggtttggtgctgcttta
aatattgaaacactagttgctgctgcagagagaagacaaacacctatagaggctccagca
tcagaggtccaggataaaatatcatttatcatgaataacctatcagatgcaaatattgtt
gttaaagcaaaagagattgtggaacttttaaaagaggagcactacccctggtttgctcag
tatattgtgatgaaaagagcaagcattgaaccaaattatcatgcattatacgtgaagctc
ctagatatagtaaatttgaaggcattattcaaggaggttgtccgagcaacctatgaaaat
tgcaaggttctgttacaatcaggtcttataaagtcaagttcagaagagcgttcattgctg
aaaaatttgggaagctggctaggaaagattaccattggcagggatcatgttttactggct
cgtgagattgatcctaagtctttgattatagaggcttatgaaaaagggttgatgattgca
gttattcccttcacctcgaagatattggaatcatgtcaaaacagtctagcataccaacct
cctaatgcatggaccatggccattcttggactacttgttgagattcatgcattgccaaat
ttaaaaatgaacctcagatttgatattgaggtgctgttcaagaaccttggtgtggatttg
aaggacataaatccaacttctcttttgaaagaacgtgttagggaatttgaaggaaatcca
gatttctcaaacaaggatgctggatcttctcaaccacagtttattggtgatatcaaattc
ggaattgtgtccaatctgaatcagggtgaactatcagttgatgttgcaagtacatcacat
cctggtcatcattcacagatagtacctcagtatgctgcttctctccatcttccatctagg
acattgacagctgaagggaagttaacagctctagtatctgatcagcatatactaccttct
gctcaaggtcttctacaagtggaaacaccattttctgttgttagccagcttccaacagct
gcatgtaatattgaggagcaagttattatcaatccaaaactccatgattttggcctgcac
tcacattttcaaagtgtacttcccattgcaatggaaaaagcaatcaaggacatagtcatg
agcattatgccccgcagtgtttctattgccactcaaacaacaaaggaacttgtgttgaag
gactattccatggaatctgatgagacccagatacgtaacgcatcacattttatggttgcc
ggtttagccggaagtctagttcatgtgtcttgcaaggaagctttatgtgtttacatatca
agtcaacttagaaatacacttgagggaacagacattgcaaatgagttccttgaacatgct
gtacaactcgtgactaatgacaaccttgagcttggctgtgcattgattgaacaaactgtg
ataaagaaggctatacaaactattgatgaaaccattgctattgagcttgccagtatgaca
cataaggaggggcacacacacattgattcatacatctatacagaacaatgcaagggagtt
ttacctgaagcccttcgcataaaatctggtcacttatcctactctcaacagcgagtttat
gaggattttgttcgcttaccttggaaaaatcaatcaatccagagctcaaatgctttgtcc
ctaggtcctgcctcatcaaataacagtattctgtcgcaggcttatgtagcaggatctgcg
caaatgagtactgctgctatttactcttctgacctttttaaggcaggagttgctgctgtt
ccaaattacttggatattgcatcagaagagatagatactagttcgtctcagcttcatagt
gcctctttacctccaattgggatgggtgacggtgctagttcttacaattttgaaaatgac
agtatagtgactccgttttcttcagtcttattgcgcccaatcaagccatgtaatgttgta
aaggggacagggtgttccatacagccacgaaaccctacactctcctctgaggatcttgga
agtagtgtttcagagctctcctctgaggatcttggaagtagtgtttcagagccatcattg
accacaggcgatgcactggacaagtaccggattattttggagaagcttgaaaatctggtg
actcgtggagctaaggaaacagaagttcagggcgctattgctgaagttccagcaataatc
ctcagatgtaaaagtcaagatgaggcagccttggctgtggctcaaaaggttttcaaagga
ttatatgaaaatgcatcaaactttgaacatgttactgttcatcttgctatgctgtgttct
atctgcgacatcagcaaggttgttgttaaggagctgactagttgggtgatttactctgat
gaggagcagaagttcaacaaagacataactgttcgtcttatacagagtgatctactgagc
cttgcagagtataatattcatatggcgaaacttattgaggctgaaagaaataagtctgca
actgagttttcaatttctcttatacaaacattgctgaagattgattcaaaagctgtattg
gagctgcaagatcttgtggatgcattgggaaagcttgctgcaagacctggttctcttgag
tcattgaaacagctggttgagatagccaagaatccttctgctaatgttgtggcttcgttt
ggtgcttctggctggaaggcggataatttcaaacaatctaagggaaaaaaggcagctatg
ctccctccaagcggtggagataagagctcttttgaatgtgttgagccaggccctgctgga
ttccatgaacaggtctccatgctgtttgttgaatggtaccggatatgtggaagtcctgga
gcaaaagatgctgcttctgcggctctctatgtttcacgactacaccgtagtggcctatta
aaaggggatgatgtctcagattgctttttccagaagctcatggaaatttccgtgttacac
tgcttatcatctgaggtgattagtttgagtctttcccaggcatctgaaccaaaacttctg
tcattccgtgctattgatctctatgccaacttggtgtactcagttgtgaagttttatcca
gttgatcagggaacaagcaaaatttccctattgtctagggtccttgccgtaactgtgaaa
ttcattcagagagattcagatgagaaggcggattcctttgatccaagaccctactttagg
ctttttataaattggataattgatttgtgttcatcagattccatatttgatggtgcaaac
tttcagatcttgactttgtttgcaagtgccttccatgctcttcaaccacttcaagtgcca
gggttcagctttgtgtggctcgagcttgttactcatagatgtttcatgccaaaattactc
gccggaaatgctcagaacgggtggccttatttccatcgattgttggttgacttgctccag
tttatggagccattccttagaaatgctgaactaggagaagcaccggtctgtcttctatat
gaagagacactcagggtgctgttaattgttcttaacgacttcccagagttcctctgtgac
tatcacttcagcttctgtgacgtgataccttcgacctgtatacagatgagaaacatggtt
cttagtgcatgtcctcgcaatatgaatctgcctaatccttcagctcctggcgtaaagatt
gatctactacctgagatcaaactatccccacgcattctgtctgaggttgatgctgctctt
aaaacaagacaacttaagcatgatgtggatgaataccttaagacaaggcaacaggggtct
ctgtttcttagggagttgaagcaaacactgttactgtctcctagtgaagctgcccgggct
gggactcattataatgtgcctcttatcaactctcttgtgctctatgttgggatcttggct
gtacaacagctgcagatgacaacaagaacagcaacatctaataataatagtaattcacaa
gtgctgctgctggcaaatagtgctccgaatccttcaacagtactcgatgctgcttttgat
atcttcaagactttatgcatggagttggacaaggaggggcgttacgtgttgttgaatgca
attgcaaatcaattgcgctatccaaacaaccacacgcattacttctccttaaccatcctc
tatctttttgctaactcaaaccaggaaatgatacaagaacagataataagagtgatattg
gaacgccttgttgccaaaccacctcatccatggggactcgtggtcactttcattgagctc
acaaggaataagaattacaacttctgggaaaggtcgttcaccaggtgttcacctgacgtt
gagaacctcctgaaatcagcattctgcaaatataatatcatccgtgctaagaattag
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integrated database retrieval system
