Ipomoea triloba (trilobed morning glory): 116020117
Help
Entry
116020117 CDS
T07384
Name
(RefSeq) RNA polymerase sigma factor sigA-like
KO
K03086
RNA polymerase primary sigma factor
Organism
itr
Ipomoea triloba (trilobed morning glory)
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
116020117
Transcription machinery [BR:
itr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
116020117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r4_2
HTH_36
Motif
Other DBs
NCBI-GeneID:
116020117
NCBI-ProteinID:
XP_031116464
LinkDB
All DBs
Position
5:complement(26972915..26977673)
Genome browser
AA seq
508 aa
AA seq
DB search
MMVTATIVGLSAGKRLICSSFYYSDIGERLSCGSDHTLPCHQVLSVNSTVMAKKSSNYST
SCVSNQRMQSIKAIKEHVTVASNLFNMEPCVQRNKQLQKQGSEEENQLEDLLLLQKFMLE
KQWNLSAEKSTIAYTTMENNCKNIQVTCSGTSARRRRIDSRRQIIQQKNSVAKIDTSKRV
RSIIGTEQLQNSLKGYVKGIVSEELLTHGEVVELSKMIKLGLYLEEQKSRLKDRLGCDPS
EEQLAVSLRISRTDLKLTMIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLIQGGLV
GLLRGIEKFDPSKGYKLSTYVYWWIRQGISRALVKNSSMLRLPKHLHGRLSLIRNAETKL
KDKGITPSIDRIAETLNISKKKVTNATEAVSKVFSLDREAFPSIDGLPGKSLHSYIADSH
LENNPWHRVDEWALKDEVNNLIHTTLKEREREIIRLYHGLDNECLTWEDISKRIGLSRER
VRQVGLVAFEKLKHAARKKRLKAMLVKQ
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgatggtcactgccaccattgttggacttagtgctggaaaaaggctcatctgctcttcc
ttttattattctgatattggtgaaaggctgtcatgtggcagcgatcacaccttaccatgc
catcaagttctgtctgtgaacagtactgtcatggctaagaagtcctccaattatagcaca
agttgtgtctccaatcagcggatgcaatccatcaaggcaataaaagagcatgtgactgtt
gcctccaatcttttcaacatggagccatgtgttcaaaggaataaacagcttcaaaagcaa
ggctctgaggaggaaaatcagctggaggatctcttattgttgcagaagtttatgctggaa
aagcagtggaatctgtcagctgagaaatcaacaatagcttacactacaatggaaaataac
tgtaagaacattcaggttacttgttcagggacatctgctcgacggaggagaatagattct
cggaggcaaattatccagcaaaaaaattctgttgctaaaattgatacaagcaagcgagtg
agatccatcattggtacggagcagcttcagaatagtttaaaaggctacgttaagggaatt
gtaagtgaagagctgctcacacatggtgaggtggtggaactatcaaaaatgataaaactt
ggcctttatttagaagaacaaaagtctaggctgaaggatagactgggatgtgatccttca
gaggagcaacttgcagtttccttgaggatttctcgtactgatttaaaattaacgatgatt
gagtgttcgttggctcgagaaaagctggcaatgagtaatgttcgtcttgtcatgtcaatt
gcacaaagatatgataacatgggtgctgaaatggctgaccttattcagggtggccttgtt
ggactactccgtggaatagaaaaatttgatccttcaaaaggatataaactatcaacttat
gtgtattggtggattcgtcagggtatctccagggcattagttaagaactcaagcatgtta
agattgccaaaacatcttcatggaagattgagcctaatccggaacgcagaaaccaagctt
aaagataaggggataactccatcaattgatagaattgctgaaacacttaacatttcgaaa
aagaaagtcacgaatgcaactgaggcagtcagcaaggtgttctctcttgacagggaagct
ttcccctctatagatggccttccaggaaaatcacttcatagttatattgctgacagtcac
ttggaaaacaacccatggcacagagttgatgagtgggcactcaaggatgaagtaaacaac
ctcattcacacaacactaaaggagcgggagagggagattatccgattataccatgggctg
gacaatgagtgtcttacctgggaagatattagtaaaaggataggattgtcgagagagaga
gttaggcaggtcgggctggtggcattcgagaaactaaaacacgctgcaaggaaaaagaga
ctgaaagccatgctggtgaaacaatga
DBGET
integrated database retrieval system
