Ipomoea triloba (trilobed morning glory): 116032632
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Entry
116032632 CDS
T07384
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03018
RNA degradation
itr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116032632
09123 Folding, sorting and degradation
03018 RNA degradation
116032632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
itr03019
]
116032632
03041 Spliceosome [BR:
itr03041
]
116032632
Messenger RNA biogenesis [BR:
itr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116032632
mRNA degradation factors
5'-3' decay
Lsm complex
116032632
Spliceosome [BR:
itr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
116032632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
116032632
NCBI-ProteinID:
XP_031131155
LinkDB
All DBs
Position
10:18334304..18338174
Genome browser
AA seq
145 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGRDDGAAGRPAKGIGRGVDD
GGAKGRGKGFSSGKASGKGGGRGRG
NT seq
438 nt
NT seq
+upstream
nt +downstream
nt
atgcttccactttctctcctcaaaactgcccagggtcatcccatgctggtggaactaaaa
aatggggaaacttataatggacatttggtgaactgtgatacatggatgaatatccatctc
cgtgaagtcatctgcacatcaaaggatggagatagattttggagaatgccagaatgttac
attcgcggcaatacaattaagtatcttcgtgtcccagatgaggtgattgataaagttcag
gaagaaacaaaaagccgaacagataggaaaccacctggagtaggacgtggaaggggaaga
ggtagggatgacggtgctgctggaagaccggcaaaaggaattgggcgtggggtggatgat
ggaggtgccaagggccgtggaaaaggattttctagtggcaaggctagtggcaaaggtggg
ggtcgtgggcgtggctaa
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