Ipomoea triloba (trilobed morning glory): 36951130
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Entry
36951130 CDS
T07384
Symbol
rpoC1, DR538_pgp075
Name
(RefSeq) RpoC1
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
itr
Ipomoea triloba (trilobed morning glory)
Pathway
itr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
itr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
36951130 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
itr03021
]
36951130 (rpoC1)
03400 DNA repair and recombination proteins [BR:
itr03400
]
36951130 (rpoC1)
Enzymes [BR:
itr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
36951130 (rpoC1)
Transcription machinery [BR:
itr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
36951130 (rpoC1)
DNA repair and recombination proteins [BR:
itr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
36951130 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-GeneID:
36951130
NCBI-ProteinID:
YP_009491716
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All DBs
Position
Pltd:complement(21217..24085)
Genome browser
AA seq
680 aa
AA seq
DB search
MIDRYKHQQLRIGSVSPQQISAWATKILPNGEIVGEVKKPYTFLYKTNKPEKDGLFCERI
FGPIKSGICACGNYRVIGDEKEEPKFCEQCGVEFIDSRIRRYQMGYIKLACPVTHVWYLK
RLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFT
TQGFDTFRNREISTGAGAIREQLADLDLRIIIENSLLEWKDLGEEEHTGNEWEDRKVGRR
KDFLVRRMELAKHFLRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVI
YRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDLI
EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLA
SNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHP
LVCKGFNADFDGDQMAVHVPLSLEAQVEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLY
VLTSENRRGICLNRYTKWNCRNSQTKRSDNSNYKYKKEPVFCNSYDAIGAYRQKRINLDS
PLWLRWRLDQRVITSRETPIEVHYESLGTYYEIYGHYLIVRSLKKEIIFIYIRTTVGHIS
LYREIEEAIQGFSRAWSSLT
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatcgatataaacatcaacagctgcgaattggatcggtttctccccaacaaata
agtgcttgggccactaaaatcctgccgaatggagagatagttggagaggtaaaaaaacca
tatacttttctttataaaaccaataaaccggaaaaagatggattattttgtgaaagaatt
tttgggcctataaaaagtggaatttgcgcttgtggaaattatcgagtaatcggagatgaa
aaagaagaacccaaattttgtgaacaatgcggagtcgaatttattgattctcggatacga
aggtatcaaatgggctatatcaaactcgcatgcccagtaacccatgtgtggtatttaaaa
cgtcttcctagttatattgcgaatcttttagataaacctcttaaagaattagagggctta
gtatactgcgatttttcttttgctaggcccataactaaaaaacccactttcttacgatta
cggggtttattcgaatatgaaatccaatcttggaaatacagcatcccacttttttttact
acccaaggtttcgatacatttcgcaatcgagaaatttctacgggtgcgggtgctatccga
gaacaattagccgatctagatttacgaattattatagagaattcgttactagaatggaaa
gatttgggggaagaagagcacacagggaatgaatgggaagatcgaaaagttggaagacga
aaggattttttggttagacgtatggaattggctaagcattttcttcgaacaaatatagaa
cccgaatggatggttttgtgtctattaccagttcttcctcctgagttgagaccaatcatt
cagatagatggggggaaactaatgagctcggatattaatgaactctatcgaagagttatc
tatcggaacaatacccttaccgatctattaacaacaagtagatctacgccaggagaatta
gtaatgtgtcaagagaaattagtacaagaggctgtggatacacttctggataatggaatc
cgcggacaaccaatgagggacggtcataataaagtttacaagtcattttcggatttaatt
gagggcaaagagggaagatttcgcgaaactctgcttggtaaacgagtcgattattcagga
cgttctgtgattgtcgtgggcccttcactttcattacatcgatgtggcttgcctcgcgaa
atagcaatagagcttttccagacatttgtaattcgcggtctaattagacaacatcttgct
tcgaacataggggttgctaagagtaaaattcgggaaaaagaaccgattgtatgggaaata
cttcaagaagttatgcaggggcatcctgtattgctgaatagagcgcccactctgcataga
ttaggcatacaggcattccagcccgttttagtggaggggcgtgctatttgtttacatcca
ttagtttgtaaggggttcaatgcagattttgatggagatcaaatggctgttcatgtaccc
ttatctttggaggctcaagtggaggcccgtttacttatgttttctcatatgaatctttta
tctccggctattggggatcccatttccgtaccaacccaagatatgcttattggactctat
gtattaacgagcgaaaatcgtcgaggtatttgtctaaataggtatactaagtggaattgt
agaaactctcaaactaaaagaagtgacaatagtaattataagtataagaaagagcccgtt
ttttgtaattcctatgatgcaattggagcttatcgacagaaacgaatcaatttagatagt
cctttatggctccggtggagactagatcaacgcgttattacttcaagagaaactcccatc
gaagttcactatgaatccctagggacttattatgagatttatggacactatctaatagta
agaagtctaaaaaaagaaattatttttatatacattcgaaccactgttggccacatttct
ctttatcgagaaatcgaagaagctatacaggggttttctcgggcctggtcatccctaaca
taa
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