Janthinobacterium sp. B9-8: VN23_05385
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Entry
VN23_05385 CDS
T04271
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
jab
Janthinobacterium sp. B9-8
Pathway
jab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VN23_05385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jab03019
]
VN23_05385
03400 DNA repair and recombination proteins [BR:
jab03400
]
VN23_05385
Enzymes [BR:
jab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VN23_05385
Messenger RNA biogenesis [BR:
jab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VN23_05385
DNA repair and recombination proteins [BR:
jab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VN23_05385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SWI2_SNF2
AAA_22
SNF2-rel_dom
WHD_3rd_SelB
Motif
Other DBs
NCBI-ProteinID:
AMC34065
LinkDB
All DBs
Position
complement(1216086..1218014)
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AA seq
642 aa
AA seq
DB search
MLNAVPLSEQLQHYFGFSQFRNGQREVVEALVDGHSAMAIFPTGSGKSLCYQLAALQMPH
LTLVISPLLALIRDQLAFLQSKDIASAAIDSSQSREETQQVMKDAQEGKLKILMVSVERL
KNERFRRFIAQIPVSLLVIDEAHCISEWGHNFRPDYLKLPDYKRELNIPQALLLTATATP
AVIKDMAAKFAIQDEHITVTGFYRSNLHLHIRPTESTHKDATLIHVLGKTPNAPCVVYVT
QQNTAEVVATMLQSKGIHATAYHAGLDNVVRQQIQDDFMRGESQVIVATIAFGMGIDKSD
IRQVIHYDLPKSVENYSQEIGRAGRDGEKSLCTLLGSQDGLNLLQNFVYGDTPEQASIAK
VLQNIVSNTENGQWEMTLYDLSSQSNIRQLPLKTLLVYLNMQGKIQPLYSYYSEYRFVLQ
MSEADLLGNFKEERRDFITSLLKHSKLARTWYSFDFDSFLGEFPAQRQRAVAALEYLDES
GYLRLETKQMTDVYQVLTPINPDELSLSFYQQFNAKEQKEIGRLAQMLALFESTQCLSHT
LAVYFGDEAAPAACGHCSVCHGKPATLPAPPALVPVDDLDLEAMCADLLIKAGKPLSAHL
LSCFLCGITLPLLTKYRASKMAYFGKLADYPFADVRAAFAAS
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcttaacgccgtaccgctttctgaacaacttcaacactattttggctttagccagttt
cgtaatggtcagcgtgaagtcgttgaagcactagtggacgggcattcggcgatggcgatt
tttccgactggatcaggaaaatcgctctgttatcagcttgctgccttacaaatgccccat
ctcactctggttatttccccgcttttggctttaatccgcgatcagctggcttttctgcaa
agtaaggacatcgcctcggccgccattgattccagccaaagccgcgaagaaacccagcag
gttatgaaagatgcgcaggaaggcaagcttaagattttgatggtgtcggtagagcgttta
aaaaatgagcgattccggcgctttattgcgcaaatccccgtctcgcttttggtgatcgac
gaggcgcactgtatttctgaatggggccataacttccgccccgattatctgaagctacct
gattacaaacgcgaattaaacatcccgcaggcgctgttgctgactgcaacggccaccccg
gcggtgattaaagatatggcggccaaatttgctattcaggacgagcacattaccgttacc
ggcttttatcgctctaatttgcatctgcatattcgccccacagaaagcacccataaagac
gccacgctgattcatgtgcttggcaaaacacccaatgcgccctgtgtggtgtatgttacc
cagcaaaataccgccgaagtggtcgcgaccatgttacagagcaagggcattcacgccacc
gcctaccatgcggggctggataatgtggtccgccagcagattcaagacgattttatgcga
ggcgagtcacaagtgattgtagcgacgattgcctttggcatgggcatcgataaaagcgat
atccgtcaggtgattcactacgacttacctaaatcggtagaaaactacagccaggaaatt
ggccgcgccgggcgtgatggtgaaaaatcgctctgtactttactgggcagccaggatggc
ctgaatctactgcaaaactttgtgtatggcgatacgccagagcaggcatcgattgccaaa
gtattgcaaaatattgtgagcaacacagaaaacggccagtgggaaatgacgctgtacgat
ttatcctcgcaaagcaatattcgccaattgccattaaaaacgctgttggtttatttaaat
atgcagggaaaaatccagcccctatatagctattacagcgaataccgttttgtattacaa
atgagcgaagccgatcttttggggaattttaaagaagagcgccgcgactttattacatct
ttactcaagcattccaagctcgcccgcacatggtatagctttgattttgattctttcctc
ggcgaattccccgctcaacgccagcgtgccgttgcagccttagagtatctggatgagagc
ggctatttgcgcctggaaaccaagcaaatgaccgacgtttatcaagtattaacgccgatt
aatccggatgaattatcgctcagcttttaccagcaatttaatgccaaagagcaaaaagaa
attggccgcctcgcccaaatgctggcgctctttgaaagcacgcaatgcctgagccatacc
ttagccgtttactttggtgacgaagccgcccctgccgcctgtggtcattgcagcgtatgc
cacggcaagccagccacgctacccgccccaccagcacttgtgccggttgatgatttagac
ttagaagccatgtgtgccgatctgcttatcaaggcaggcaagccactcagcgcccatttg
ctcagctgttttctgtgcggcatcaccttgccactactcaccaaatatcgcgccagtaaa
atggcctattttggcaaactggcggattacccctttgccgacgtaagagctgcgtttgct
gcaagctag
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