Jannaschia sp. CCS1: Jann_0004
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Entry
Jann_0004 CDS
T00330
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
jan
Jannaschia sp. CCS1
Brite
KEGG Orthology (KO) [BR:
jan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
jan03032
]
Jann_0004
03400 DNA repair and recombination proteins [BR:
jan03400
]
Jann_0004
Enzymes [BR:
jan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Jann_0004
DNA replication proteins [BR:
jan03032
]
Prokaryotic type
DNA Topoisomerases
Jann_0004
DNA repair and recombination proteins [BR:
jan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Jann_0004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
Toprim_4
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
ABD52921
UniProt:
Q28WH7
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All DBs
Position
3950..6367
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AA seq
805 aa
AA seq
DB search
MNDIPASGDDYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAG
HADAVTVTLHADSSVSVSDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGG
LHGVGVSVVNALSDWLELRIWRDGKEHIARFEGGFTTKPLEVVSECGDRTGTEVRFMAST
ETFSNLDYVFKTLENRLRELAFLNSGVRIILRDERPAEALESDLFYEGGVREFVRYLDRS
KTSAMEEPIFITGEKDDIGVEVAMWWNDSYHENVLPFTNNIPQRDGGTHLAGFRGALTRT
INLYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVEGL
VNEKLQEWFEEHPHEARVIVSKIVEAALAREAARKARELTRRKTAMDIASLPGKLADCQE
KDPSKSELFLVEGDSAGGSAKQGRSRHNQAVLPLRGKILNVERARFDRMLGSQEIGTLIT
ALGTGIGRDEFNIDKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPELIEGGYLYIAQP
PLYKVSRGKSEVYLKDETALEDYLVAQGVEGASLRLSSGEEIAGQDLARVVTGARNFKRI
LDAFPTHYPRRIVEQAALAGAFDAGKADADLQGVADDVAKRLDLVAVEYERGWNGRITQD
HGIRLSRVLRGVEEIRTLDGAVLRSGEARKLAEVSKDSRTVYQDPATLTRKDRVQLIHGP
TELLKAILDEGAKGQQMQRYKGLGEMNPDQLWETTLDHEARTLLQVKIDDLADADDIFTK
LMGDVVEPRREFIQNNALSVENLDF
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacatacccgcgagcggtgacgactacggcgctgattccatcaaagttctcaaa
gggttggaggcggttcgtaagcgccccggcatgtatatcggcgataccgatgacggctct
ggtctgcaccacatggtctatgaggtcgtcgacaacggcatcgacgaggctctggccggt
cacgcggacgccgtgacagtgacgctgcacgccgacagcagcgtttcggtgagcgataat
ggacgcggcattcccgttggcatccacgaagaagaaggtgtctccgccgctgaagtcatc
atgacccagcttcatgcgggcggtaagttcgacagcaactcctacaaggtctcgggcggt
ctgcacggcgtcggcgtatccgtggtgaacgccctgtccgactggttggagctgcggatc
tggcgtgacggcaaggaacatatcgcgcggtttgagggcggctttaccaccaaaccattg
gaagtcgtcagcgagtgcggcgaccgcaccggcacggaagtgcgcttcatggcctcgact
gagacattctccaacctcgattacgtgttcaaaacccttgaaaaccgtttgcgggaactt
gcattcctgaactcgggcgtgcggatcatcctgcgcgatgaacggcccgccgaggcattg
gaatcggacctgttttatgaaggtggcgtgcgggaattcgtccgctatctggaccgctcc
aagacatccgccatggaagagccgatcttcatcaccggcgagaaggacgatatcggcgtc
gaagtcgccatgtggtggaacgacagctaccatgagaacgtcctgccgtttaccaacaac
atcccccagcgggacggcggcacccacctggcgggcttccggggggcactgacgcggacg
atcaacctttatgcgcagtcctcgggcatcgcgaagaaagagaaggtcagcttcaccggc
gatgatgcgcgtgagggcctgacctgtgttctgtccgtcaaagtgccagatccgaaattc
agttctcagaccaaagacaagctcgtctcgtccgaggtgcgccccgccgtcgaaggcctg
gtgaacgagaagctgcaagagtggtttgaagagcatccccacgaggcgcgcgtgatcgtg
tccaagatcgtggaagccgcactggcccgcgaagccgcccgcaaagcgcgggaattgacc
cggcgcaagacggcgatggatatcgcctcgctccccgggaagctggccgattgtcaggag
aaagatccgtccaaatccgagctgttcctggtggagggtgacagcgccggtggctctgcc
aagcagggccgctcccgtcataaccaggcggtcctgcccctgcgcggtaaaatcctgaac
gtggaacgcgcgcgctttgaccggatgttgggaagccaggaaatcgggacgctgatcacc
gcccttggcactggcattggccgggacgagttcaacatcgacaagctgcgctaccacaag
atcatcatcatgaccgacgccgacgttgacggcgcgcatatccggacgcttttgctgacc
ttcttcttccgccagatgccggagctgattgaaggcggctacctctatatcgcgcagccg
ccgctttataaggtcagccgcggcaagtccgaggtctatctgaaggacgaaaccgcgctg
gaagattatctggttgcccaaggtgtcgaaggcgcgtcgctgcgtctgtcctcgggagaa
gagattgccgggcaggatctggcccgcgtcgtcaccggcgcgcgcaacttcaagcggatc
cttgatgcgtttcccacacattacccccgccgcatcgtcgaacaggccgcacttgccggt
gcatttgacgcgggcaaagccgatgcggatctgcaaggggtcgccgatgatgtggccaag
cgcctcgatctggttgcggtggaatatgagcggggctggaatggccgcattacccaggat
catggcatccgcctgagccgcgttttgcgcggtgtggaagagatccgcacccttgacggc
gcagtcctgcgatccggtgaggcgcgcaagctggccgaagtctccaaggacagccgcacc
gtttaccaggaccctgcgacgctgacccgcaaggatcgggtacagttgatccacggcccg
acagagcttctgaaggcgatcctggatgaaggcgccaagggccagcagatgcagcgctac
aagggtctgggtgaaatgaacccggaccagctgtgggaaaccacgctggatcacgaagcc
cgcacgctgttgcaggtgaagatcgacgatctggccgatgccgacgacatcttcaccaaa
ctgatgggcgatgtggtggagccccggcgggaattcatccagaataatgcgctcagcgtg
gaaaatttggatttctag
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