Jannaschia sp. CCS1: Jann_0568
Help
Entry
Jann_0568 CDS
T00330
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
jan
Jannaschia sp. CCS1
Pathway
jan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Jann_0568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jan03021
]
Jann_0568
03400 DNA repair and recombination proteins [BR:
jan03400
]
Jann_0568
Enzymes [BR:
jan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Jann_0568
Transcription machinery [BR:
jan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Jann_0568
DNA repair and recombination proteins [BR:
jan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Jann_0568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ABD53485
UniProt:
Q28UX7
LinkDB
All DBs
Position
552210..556298
Genome browser
AA seq
1362 aa
AA seq
DB search
MPNLIEVQKSSYDLFLKSGDQLEPMDGEGIKGVFQSVFPIKDFNETAILEFVKYELETPK
FDVEECQQRDLTYAAPLKVTLRLIVFDIDEDTGAKSVKDIKEQDVFMGDMPLMTPNGTFV
VNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFACRIIPYRGSWLDFEFDAKDIVFSR
IDRRRKLPVTTLLYALGLDQEGIMDAYYDTVTFKMVKNKGWSTKFFPERVRGTRPTTDLV
DAKTGEVIAEAGKKVTPRAVKKWIDEGSIENLLVPFDGIVGRFAAKDIINEETGAIYVEA
GDELTWELDKAGEVSGGTLKELIDAGITEIPVLDIDNVNVGPYMRNTLAVDKNLNRESAL
MDIYRVMRPGEPPTVEAASNLFDQLFFDSERYDLSAVGRVKMNMRLDLDAEDTMRTLRKE
DIISCIKALVELRDGRGDIDDIDHLGNRRVRSVGELMENQYRVGLLRMERAIKERMSSVE
IDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERA
GFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATYARVNKYGFIETPYRRVNDAVVSDDV
VYMSATEEMRHTVAQANANLDDDGKFVNDMVNTRMSGEYTLNPREAIDLIDVSPKQLVSV
AASLIPFLENDDANRALMGSNMQRQAVPLLQADAPFVGTGIESVVAKDSGAAIMAKRGGV
IDQVDAQRIVIRATEDLELGDAGVDIYRLRKFQRSNQNTCINQRPLVKVGDKIGKGEVIA
DGPSTDIGELALGKNVIVAFMPWNGYNYEDSILISERISRDDVFTSIHIEEFEVAARDTK
LGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKITPKGESPMTPEEKLLRA
IFGEKASDVRDTSLRVKPGDYGTIVEVRVFNRHGVEKDERALQIEREEVERLARDRDDEL
VILERNIYARLRGMIMGKTAVKGPKGVKPNTVIDEDLLDGQLSRGQWWQLALEDEKDAAH
IEALNQQFDTQKRALDHRFEDKVEKVRRGDDLPPGVMKMVKVFIAVKRKLQPGDKMAGRH
GNKGVISKVVPMEDMPFLADGTPVDFVLNPLGVPSRMNVGQILETHMGWAARGMGLQIDE
ALDEYRRSGDMTPVRDALKIAYGDDVYDDAFADRDEESLLEAAGNVTKGVPIATPVFDGA
KEADVNDALIRAGFSTSGQSKLFDGRTGEQFAREVTVGVKYLLKLHHLVDDKIHARSTGP
YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYESIVK
GEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEDDEGGIAAE
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgccgaacctgatcgaggtgcagaagtcgtcctacgacctgttcctgaagtcgggcgat
cagttggagccgatggacggcgaaggcatcaagggtgtcttccagtcggtgttcccgatc
aaggatttcaatgaaaccgcgattcttgagttcgtgaagtacgagctggagaccccgaag
ttcgacgtcgaggagtgccagcagcgcgacctcacctatgccgcgcccctcaaggtgacg
ctgcggctgatcgtgttcgatatcgacgaggataccggcgcgaaatccgtcaaggacatc
aaggaacaggacgttttcatgggcgacatgcccctgatgacgcccaacgggacgttcgtt
gtgaacggcaccgagcgtgtgatcgtatcccagatgcaccgctcgcccggcgtgttcttt
gatcacgacaagggcaagacccactcctcgggcaagctgctgttcgcctgccgcatcatt
ccctatcgcggctcctggctggacttcgagtttgacgccaaggacatcgtgttctcgcgc
atcgaccgtcgtcgtaaactgcccgtgaccacgctgctttatgcgctgggtctggaccag
gaaggcatcatggatgcctattacgacaccgtcaccttcaagatggtgaagaacaagggc
tggtccacgaagttcttccccgagcgtgtgcgcggcacccgtccgaccaccgatctggtc
gacgccaagaccggtgaagtgatcgccgaggcgggcaagaaggtcacgccccgcgcggtg
aaaaagtggatcgacgaaggctccatcgagaacctgctggtgccgtttgacggcattgtc
gggcgatttgccgccaaggacatcatcaatgaagaaaccggcgcgatttatgtcgaagcc
ggcgatgagttgacctgggagctggacaaagccggcgaggtcagcggcgggacgctgaaa
gagctgatcgacgcgggcatcaccgagatccccgtgttggacatcgataacgtcaatgtc
ggcccctacatgcgcaacacgctggccgtggacaagaacctcaaccgcgagagcgcgttg
atggatatctaccgcgtcatgcgtccgggcgagccccccaccgttgaagccgcgtcgaac
ctgttcgaccagctgttcttcgacagcgagcgttatgacctcagcgccgttggccgggtg
aagatgaacatgcgtctcgatctggacgcggaagacaccatgcggacgctgcgcaaggaa
gacatcatctcctgcatcaaggcgctggtggaactgcgcgacgggcgcggcgatatcgac
gacatcgaccacctcggcaaccgtcgtgtgcggtccgtcggtgagttgatggagaaccag
taccgtgtgggcctgttgcgcatggagcgcgcgatcaaggagcgtatgtcctcggtcgag
atcgacacggtcatgccgcaggacctgatcaacgccaagccagcggcggctgccgttcgt
gaattcttcggctcctcgcagctgtcgcagttcatggaccagaccaacccgctgtctgag
gtgacgcacaaacgccgcctgtcggcgcttgggccgggtggtctgacacgcgagcgtgcg
ggctttgaggtgcgcgacgtgcatcccacgcactacggtcgcatgtgcccgattgaaacg
ccggaagggccgaacatcggcctgatcaactcgctggccacctatgcccgcgtgaacaaa
tacggcttcatcgaaacgccctatcgccgtgtgaacgacgctgtggtctccgacgacgtg
gtctacatgtccgcaacggaagagatgcgtcacaccgtggcgcaggccaacgcgaacctt
gatgacgatggcaagttcgtcaacgacatggtcaacacgcggatgtccggcgaatacacg
ctgaacccccgtgaagcgattgacctgatcgacgtgtcgccgaagcagttggtctccgtc
gcggcctcgctgatcccgttcctggagaacgacgacgcgaaccgcgcgttgatgggatcg
aacatgcaacgccaagccgtgccgcttctgcaggccgatgctccgttcgtgggtaccggg
attgagagcgttgtggcgaaggattccggcgcggccatcatggccaagcgcggcggtgtc
atcgaccaggtcgatgcgcagcggatcgtgatccgggccaccgaagatctggaattgggc
gacgcgggcgtggacatctaccgtctgcgcaagttccagcgctccaaccagaacacctgc
atcaaccagcgtccgttggtgaaggtgggtgacaagatcggtaagggcgaagtgatcgcc
gatggaccaagcacagatatcggtgagttggcccttggtaagaacgtgatcgtcgcgttc
atgccgtggaacggctacaactatgaggactcaatcctgatttccgagcggatttcgcgt
gacgacgtcttcacctcgatccatatcgaggagtttgaagtcgccgcccgtgacacgaag
cttgggccggaagagatcacccgtgacatccccaacgtcggcgaggaagccctgcgcaac
ctcgacgaggcgggcatcgtctacatcggtgccgaagtggaaccgggcgatatccttgtc
ggtaagatcacgccaaagggtgaaagcccgatgacgccggaagaaaagcttctgcgcgcc
atctttggtgagaaagcctcggacgttcgtgacacatcgctgcgcgtgaagcccggcgac
tacggcacgatcgtggaagtgcgcgtcttcaaccgccacggtgtggagaaggacgaacgt
gccctccagatcgagcgggaagaggtcgagcgtctggcccgtgaccgtgacgacgagttg
gtgatccttgagcggaacatctacgcccgtctgcgcggtatgatcatgggtaaaaccgcc
gtcaaaggccccaagggcgtgaagcccaacacggtcatcgacgaggatctgctggatggt
caactcagccgcggtcagtggtggcagttggcgctggaagacgagaaggacgcggcgcat
atcgaggccctgaaccaacaattcgacacgcagaagcgcgcgttggatcaccggttcgag
gacaaggtcgagaaggtccgtcgcggcgacgatctgcccccgggcgtgatgaagatggtc
aaggttttcatcgccgtgaagcgcaagttgcagcccggcgataagatggccggtcgtcac
ggcaacaagggtgtgatctcgaaggtggtcccgatggaggacatgccgttcctggcagac
ggtacgccggttgatttcgtgctgaacccgctgggtgtgccctcgcgcatgaacgtgggt
cagatcctggaaacccacatgggttgggccgcacgcggcatgggtctgcagatcgacgaa
gcactggacgaatatcgccgctctggcgacatgaccccggtgcgcgatgccctgaagatc
gcctatggcgacgacgtctacgacgacgcgtttgccgaccgcgacgaggagtctctgctg
gaggccgcaggcaacgtgaccaaaggtgttccgattgcaacgcccgtctttgacggcgcg
aaggaagcggatgtgaacgatgcgctgatccgcgcgggcttctccacctccggtcagtcg
aaactgttcgacggtcgcaccggtgagcaattcgcccgcgaagtgacggtgggtgtcaaa
tacctgctgaagctgcaccacctggtcgacgacaagatccacgcccgctcaaccgggccg
tactccctcgtcacgcagcagccgctgggtggcaaagcgcagttcggtggtcagcgcttc
ggtgagatggaggtctgggcgctggaagcctacggcgccgcctacaccttgcaggaaatg
ctgacggtcaagtcggatgacgttgcgggccgaaccaaggtatacgagagcatcgtgaag
ggtgaggacaacttcgaggccggcgtgccggaatcgttcaacgttctcgtcaaggaggtc
cgcggattgggcctcaacatggaactcctcgacgctgaggatgatgaagggggcatcgca
gcggaatga
DBGET
integrated database retrieval system
