Janthinobacterium tructae: FJQ89_20005
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Entry
FJQ89_20005 CDS
T06359
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
jas
Janthinobacterium tructae
Pathway
jas03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FJQ89_20005 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jas03021
]
FJQ89_20005 (rpoC)
03400 DNA repair and recombination proteins [BR:
jas03400
]
FJQ89_20005 (rpoC)
Enzymes [BR:
jas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FJQ89_20005 (rpoC)
Transcription machinery [BR:
jas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FJQ89_20005 (rpoC)
DNA repair and recombination proteins [BR:
jas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FJQ89_20005 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
PYNP_C
Motif
Other DBs
NCBI-ProteinID:
QDG72440
UniProt:
A0A4Y6RJ90
LinkDB
All DBs
Position
4556999..4561240
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQTNETFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFTAFM
GAEGIRELLRSIDIHRDAETLRVELKESKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEIQEPVVWDILEDVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINAKNEGMMFPDVSEVIRAYDNK
EVELTTRVTVRITEYPKNAETGEFEKTITRYETTIGRAILSEILPKGLPFSVLNRALKKK
EISKLINTSFRKCGLRATVVFADKLMQSGFRLATRAGISICVDDMLVPPQKVTLIAAAES
EVKQIEQQYASGLVTAGERYNKVVDIWGKTSDEVGKAMMDQLKVEDVIRRDGTKSTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTMNGALMKALVEGGEVIEALRDRI
LGRVTVHDVVHPETQETLYEAGSLLDEDMVEEIERLSIDEVKVRTPLTCDTRFGLCAKCY
GRDLGRGMLVNAGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTIR
FTATMRYVTNGKGAQIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGLVIKAGTALA
TWDPLTRPIITEYAGQVRFENVEEGVTVARQVDEVTGLSTLVAIDAKRRGSLTKTLRPQV
KLINEANEEVKIAGTEHSVAIGFQVGALIMVKDGQQVSVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQIVNAGDTNYIVGEQVERSELLDQNDLMEAGNKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPGGTGLAFHRARKEKEAWEVEE
RQALLLAEKASMAGEAAEALQDIESQQHHGDEA
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctattcaagcaagtacagaccaacgagaccttcgatgcaatc
aagatcggtctcgcttcgcctgagaaaatccgttcgtggtcctacggcgaagtcaaaaag
ccggaaaccatcaactaccgtaccttcaagcctgagcgcgatggcctgttctgcgccaag
atctttggcccgatcaaggattacgaatgcctgtgcggcaagtacaagcgcctgaaacac
cgcggcgtgatctgcgaaaagtgcggcgtcgaagtcacgctggccaaggtgcgccgcgag
cgcatgggccacatcgagctggcctcgccgaccgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtcctggacatgaccctgcgggacatcgaacgcgtgctgtac
tttgaagcatacgtcgtgaccgatccaggcatgaccccgctgaagaagtgccagatcatg
tcggaagacgactacgccgccaagtacgaagagtacggcgacgacttcaccgccttcatg
ggcgccgaaggtatccgtgaactgctgcgctcgatcgacatccaccgcgatgccgaaacc
ttgcgcgtggaactgaaggaatcgaaatccgaagccaagatcaagaaatacgccaagcgc
ctgaaagtgctggaagcgttccagcgttcgggcatcaagcctgactggatgatcatggaa
gtgctgccggtgctgccgccggaactgcgtccgctggtaccgctggacggtggccgtttc
gcgacctcggatctgaacgatctgtatcgccgcgtcatcaaccgtaacaaccgtctgaaa
cgcctgatggagctgcgcgctccagagatcatcacgcgcaacgaaaagcgcatgctgcaa
gaagcggtcgattcgttgctggacaacggccgtcgcggcaaagcgatgaccggcgccaac
aagcgtccgctgaaatccctggcagaaatgatcaagggcaagggcggccgtttccgtcaa
aacttgctgggcaaacgcgtcgattactccggtcgttcggtcatcgtcgtgggcccgcaa
ttgaaactgcatcagtgcggcttgccgaaactgatggcgctggaactgttcaaaccgttc
attttcaataaactggaactgatgggtctggcgaccacgatcaaggccgcgaaaaagctg
gtcgagattcaagagccggtcgtgtgggacatcctggaagacgtgattcgcgaacatccg
atcatgttgaaccgcgcacctacgctgcaccgtctgggtatccaggctttcgagccagtc
ctgattgaaggcaaggccatccagttgcacccactcgtctgcgccgcattcaacgccgac
tttgacggtgaccaaatggcggtccacgttcctctgtcgatcgaagcgcagatggaagcg
cgcactttgatgctggcatcgaacaacatcctgttcccatcgaacggcgaaccgtcgatc
gtgccgtcgcaggatatcgtgctgggtctgtactacgcgacgcgtgaagcgatcaatgcg
aagaacgaagggatgatgttccctgacgtctcggaagtgatccgcgcctacgacaacaag
gaagtcgaactgacgacccgcgtgaccgtgcgtattaccgaatacccgaaaaacgccgaa
acgggcgaattcgagaaaacgattacccgctacgaaacgacgatcggccgtgcgatcctg
tcggaaattctgcctaaaggcttgccgttctccgtcctgaaccgcgcgctgaaaaagaaa
gaaatttccaagctgatcaacacgtcgttccgcaagtgcggcctgcgcgccaccgtggtg
ttcgcagacaaactgatgcaatcgggtttccgcctggcgacacgcgccggtatctcgatc
tgcgtcgacgacatgctggtaccgccgcaaaaagtcaccctgatcgcggcggccgagtcg
gaagtcaagcagatcgaacagcaatacgcctcgggtctcgtgaccgccggcgagcgttac
aacaaggtagtcgatatctggggcaaaacctcggatgaagtcggcaaggccatgatggac
cagctcaaagtcgaagacgtgatccgccgcgacggcaccaagtcgacgcaagaatcgttc
aacgccatttacatgatggccgactccggcgcgcgcggttccgcagcccagattcgtcag
ttggccggtatgcgtggtctgatggccaaaccggatggctcgattatcgaaacgccgatt
accgcgaacttccgcgaaggtctgaacgttttgcagtacttcatttcgacccacggtgcg
cgtaaaggtctggccgatacggcgctgaaaacggctaactccggttacctgacgcgtcgt
ctggttgacgtgacgcaggatctggtcgtgatcgaggacgattgcggcaccatgaacggc
gcgctgatgaaggcgctggtcgaaggtggtgaagtcatcgaagcgctgcgcgaccgtatc
ctcggccgcgtcaccgtgcacgatgtcgttcatcctgaaacccaggaaacgctgtacgaa
gccggttcgctgctggatgaagacatggtcgaagagatcgagcgtctgtccatcgatgaa
gtcaaggtccgtacgccactgacttgcgacacgcgcttcggcctgtgcgccaagtgctat
ggccgcgacctgggccgcggcatgctggtcaacgccggcgaagccgtcggtgtggtggca
gcgcagtcgattggtgagccgggtacccagctgaccatgcgtacgttccacattggtggt
gcggcatcgcgtgcggcagtggcatcgtcggtggaagccaagtcgaacggtaccatccgc
ttcacggcaaccatgcgttacgtgacgaacggcaagggcgcgcaaatcgtcatttcccgt
tccggcgaagtgctgatcaccgacgaccatggccgtgagcgtgagcgtcataaagtgccg
tacggcgcgaccctgatcgtcaaggacggcctggtcatcaaggccggtacggccctggca
acgtgggatccgctgacccgtccgatcattaccgaatacgccggtcaagtgcgtttcgag
aacgtcgaagaaggcgtcaccgtcgcccgtcaggtcgacgaagtgaccggtctgtccacc
ctggtggcgatcgatgcgaaacgtcgcggttcgttgacgaaaacgttgcgtccgcaagtc
aagctgatcaacgaggcgaacgaagaagtcaagatcgccggtaccgaacactcggtggcg
atcggcttccaggtcggcgcgctgatcatggtcaaggacggtcaacaggtatcggttggt
gaagtgctggcacgtattcctaccgaatcgcaaaaaacgcgcgatattaccggtggtctg
ccacgcgttgcggaactgttcgaagcgcgctcgccgaaagatgccggtatgctggcggaa
gtcacgggtacggttgcgttcggtaaagaaaccaagggcaagcagcgtctggaaatcacg
gacatggacggcaacaagcatgagttcttgatcaccaaggacaaacaagtgctggtgcat
gacggccaagtcgtgaacaagggcgagatgatcgtggacggcccggccgatccgcaagac
atcctgcgcctgctgggtatcgaagcactggcacgttacatcgtcgacgaagtgcaagac
gtgtaccgtctgcaaggcgtgaagatcaatgacaagcacatcgaagtgatcgtgcgtcag
atgctgcgccgtgtgcagatcgtcaatgccggcgacaccaactacatcgttggcgagcag
gttgagcgttcggaactgctggatcagaacgacctgatggaagccggaaacaaaattcct
gcgacctacgaaaacgttctgctgggtattaccaaggcttcgttgtcgaccgattcgttc
atctcggccgcatcgttccaggaaaccacccgcgtgctgaccgaagcggcgatcatgggc
aagcgcgatggtttgcgcggcctgaaagagaacgtcatcgtcggccgtctgattcctggc
ggtacgggcctggccttccaccgcgcacgcaaagaaaaagaagcgtgggaagtggaagag
cgtcaagcactgctgctggccgagaaagcctcgatggccggcgaagctgccgaagcgttg
caggacatcgaaagccagcaacaccacggcgacgaagcgtaa
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integrated database retrieval system
