Jatropha curcas (Barbados nut): 105643779
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Entry
105643779 CDS
T03922
Name
(RefSeq) uncharacterized protein LOC105643779
KO
K14311
nuclear pore complex protein Nup188
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105643779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105643779
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
105643779
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup188_N
Motif
Other DBs
NCBI-GeneID:
105643779
NCBI-ProteinID:
XP_012084375
LinkDB
All DBs
Position
Unknown
AA seq
1970 aa
AA seq
DB search
MSNPKSADPSLWWDSFTSLLTDLENAPLSSDLPASLAKQLKENHDWFVDTVSLFKPPSAK
SREVLNSQLVKVGSHELNIKSELKDKALQISSYLHLDEVQSYILVERSLESNGLAADSIV
EEYLHVIMLQYYIERQCLLKCTRQILTHALYVGISSKGENFIRDEAIKLISDGLECKLIS
VLQELLSSSHPEEMDVDLYTLWAEERLIEDNLVLDILFLVYYESLCTCNGETWKKLCSLY
KGILSGSYNFGRLEISSEALKSSYHAKIQLLLILMETLDLENLLQLVHDGIPFRPGASIF
SLTDIQQMDALISSFNAFEMKEAGPLMLTWAVFLCLISSLPRKEENDVLMEIDHVGYLRQ
AFESASLNYFLEILDSSLLKESDGPVAGYRSVLRTFVSSFIASYEINLQLEDSTFNLILD
ILCKIYRGEESLCSQFWDRESFIDGPIRCLLCNLEGEFPFRTQEFVRLLSSLCEGCWPTE
CVYNFLDKSVGISSLFEITSESLVDSISQIVETRLPLHVPGVEGLLIPAKTRGHVLKIIG
GNTAIVRWEYSQSGMLVLLLRLAQELYLESNEEVFLSLDLLSRMVSFNTGVAFSLMEIGS
SFNYQAAEIKGQTDRNLWVVEIICAVIKNLSPSPGAAAVLSMGVSILARMLKCAPSHVAA
VALKTNIFEMTSKTSIFYVGYDGLSSGSWLLSGQLAKMLLLDAEQNEYENPLIISVLEFT
MQLLETRVENEFVLALVVFSLQYILINHEYWKYKVKHVRWKVTLKVLEVMKTCMMSISFS
EKLGFAIRDMLLSDSSIHGVIFRVICTTKQTLENLYVSRLIELAEIEGLQLAISSALDIL
YIMLSKFSEDISDGLPVFQQAVLSSSTKLSPVVAAVISLMSYSRNSAIQVEATKVLSTLM
IMADYFKPYLSSNVCFGLDDKQIADLRHSVDSALSKRLEWNESLFVAIVNMLTSAARHQP
AFLVSIFAPKVDPEVQSKNAGGMKQPTSETLDGPQGSQKSSLLDALMQYVDRAGDFINSN
PRILLSVLDFLKALWQGAVPYINILEHLQSSRMFWKQLSNCISLVTSSKTSLLENLTKME
AQSLMYKYRCQCSILEIMACEMFLKKKLLHAESLSKEAPQSKDSTEISASTEKSKSASDC
DLKDIFSSWFDMSILGKLIKSYTYCEYDDGICYRAKVAASLFIVQAIGKLESGNSGSLSL
SLLEKIRIAFEKMICQPAFSELLAQYSKRGYSEGKELKSLILNDLYYHLQGEFEGRKIGP
GPFKELSLYLVESKFLETYKKKYNDACLTDTKNIYLYDLTRIQTELGLHMWDYTEWKEHK
GTAEKMLDCMQQVNSMVLLSSSKHSTLKALITVLTLYEDNLPEKEATTCGKIPDQLCFSC
IDHICRCFHDTVESLAPTLDASEEILDFLSAQAELLLHLVRSAQGSLSVSACVIVLKTSG
SGLRMLSDFWSAISGIKKTMKVLLMLLLFAVESSITPDKKSEGFAEVSNVCLSLLPILCN
CITTAEHSSLSLTAIDLILRTLLTPKTWFPIIQKHLRLQHVILKLQDDNSLASIPTTLKF
LLTLAHVRGGAEMLLNAGFFSSLKALFGNLLDDRPSAVNTNTNNSFPKSSEKDEKPQCIW
GLGLAVVIAMIHSLGDSCTDLMDNVIPYLFSEKAYLISYYLDAPDFPTDSHDKKRLRAQR
TQTSLSTLKETEHTLMLMCTIAKHWNLWVKAMKETDSPLREKSIHLLAFISRGMHRLGES
PGRTAPLLCPPILKEEFESCKKPAFLNCRNGWFALSPICCASKQKLPTASATSTALVIKG
QSTETANPVSPTYFSDLLALQIYRIAFLLLKYLCLEAEAAVKRSEEVGFFDLAHIPELPM
PEILHGLQDQAVAIVSEVCNANKSKQIHPEIQSVCLLLLQIMEMALYLELCVLQICGIRP
VLGRVEDFSKEVKLLLIAMEGHVFSKASVKSLKQIISLVYPGLLQTEGLL
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaccctaagtccgccgatccctccctctggtgggactctttcacttctcttctc
actgacctcgaaaatgctcctctctcttcagacctccctgcatccctagcgaagcagttg
aaggagaatcatgattggtttgttgacacagtgtctctcttcaagcccccaagtgcgaaa
tcaagagaagttttgaattcgcagctagtgaaagttggttctcatgaattgaatataaag
agtgaattgaaagataaggctttgcaaataagttcttatttgcatttagatgaggtgcag
tcatacattcttgtggaaaggtctctcgagagcaatggtttagctgctgattccatagtt
gaagaatatcttcatgtgataatgcttcagtactacattgagcgacagtgcttgttgaag
tgtaccaggcagattctcacgcatgctttatatgttggaattagctcgaaaggagaaaat
ttcattagggatgaggcaataaagctgatttctgatggactggaatgcaaattaatctct
gtcctccaggaacttctatcctccagtcatcctgaggagatggatgtagatctttacact
ttgtgggctgaggagagattgattgaagataatttggtgttggatattctcttccttgtt
tattatgaatcactttgcacatgtaacggtgaaacgtggaaaaagctatgctcactttat
aaggggattttatctgggtcttataattttgggaggttggagatatcaagtgaggcacta
aagtcttcttatcatgccaaaattcagttactactcatccttatggaaaccttggacctg
gaaaatcttcttcaattggtgcatgatggaatccctttcaggccgggcgcttccatattt
tccttgactgatattcaacaaatggatgcattgatatctagttttaatgcttttgaaatg
aaagaagcaggaccactaatgctcacatgggcagtatttctatgtctaatttcatcgctt
cccaggaaagaagaaaatgatgtgttaatggagattgatcatgtaggttacctacgtcaa
gcatttgaaagtgcatcactaaattattttcttgaaattcttgatagcagtttgctgaaa
gagtcagatgggcctgtagctggctatcgaagtgtcttgagaacttttgtctcttctttt
attgcatcttatgagataaaccttcagttagaagacagtacctttaatctcatattggat
attctttgcaagatctatcgaggagaggagtcactttgtagtcagttttgggacagagaa
agtttcatagatggtcctattcggtgtcttctctgcaacttagagggtgaatttcccttc
aggactcaagaatttgttcgccttttatcatccctttgtgaaggatgttggcccacagaa
tgcgtatataactttcttgataaatctgtgggtatatcttcgttatttgaaattactagt
gaatccctggtggacagcatctcacaaattgttgaaactcgcctgccattgcatgttcct
ggagtggaaggtttgctaattcccgctaaaactcgtggacatgtgttgaaaattattggt
ggtaatactgctattgtacgctgggagtattcacaatctgggatgcttgtcctacttttg
cgtttggcccaagagctgtatttggagagcaacgaggaagtttttctttctcttgaccta
cttagtcgaatggtatcttttaacacgggtgtagctttttcattgatggaaattggcagc
tcatttaactatcaagcagctgaaatcaaggggcagactgacaggaatttgtgggtggtt
gaaattatttgtgctgttattaaaaatctgtctcctagtcctggtgctgctgcagtgctg
tctatgggtgtcagtattttagcgaggatgttgaaatgtgctccatctcatgttgctgct
gtcgctctgaaaacaaatatatttgagatgacctcaaaaacaagcattttttatgttggc
tatgatggcttatcaagtggatcatggttgctttctggacagctagcaaaaatgctctta
ctagatgctgagcagaatgaatacgagaatcccttaataatatcagtcctggagtttacc
atgcagcttctcgagacaagagtagaaaatgagtttgttctagctttagttgttttctct
ctgcagtatattctaattaatcatgagtactggaaatacaaggtgaagcatgttagatgg
aaagtaacattgaaggtgttggaggtgatgaaaacttgcatgatgtcaatctcattttct
gaaaaattaggttttgctatccgtgatatgttactctctgattcttctatccacggtgta
atctttcgagtcatttgtacaactaaacaaaccttagagaacctttatgtcagccgtctc
attgaactggcggagatagaaggacttcagcttgctattagttctgctttggatattcta
tacattatgctttccaaattttctgaggatatctcagatggtcttcctgtctttcagcaa
gcagtgctgtcatcttcaacaaaactgagtccagttgttgcagctgttatatctttgatg
tcttattctcgcaattctgcaatacaggttgaggccaccaaggttttatcaactttgatg
attatggcagattattttaagccatatttgtctagcaatgtgtgttttggtctggatgat
aagcagattgcagatctaaggcattctgtggacagtgcattatctaagcggttagagtgg
aatgaaagtctatttgttgctatagtcaatatgcttacttctgcagcacgccatcagcct
gcttttcttgtttcgatttttgctccaaaggtggatcctgaagtccaatcaaagaatgct
ggaggcatgaagcaaccaacaagtgaaactttggatggcccacaggggtcccagaaatca
agtttgcttgatgcactcatgcaatatgtagatagggctggtgattttattaacagcaat
ccgcggatactgctcagtgtacttgatttcctgaaggcattgtggcaaggggctgttcct
tatataaatattttggagcatctacaaagctctagaatgttttggaaacaactatccaac
tgtatttcattagttactagctcaaaaacttctctgcttgaaaatctgaccaaaatggag
gctcaaagcttgatgtacaaatatcggtgtcaatgttctatattggaaataatggcatgt
gaaatgtttctgaagaaaaaattgttacacgctgagtcactttcaaaagaagcccctcaa
tctaaggacagcacggaaatttcagcgagcactgaaaaatcaaaatctgcaagtgattgt
gatttgaaagacattttttcaagttggtttgatatgtccattttgggaaaactgatcaaa
tcatatacttattgtgaatatgatgatggaatttgttatcgtgcaaaggttgctgccagt
ttgttcattgtccaagcaattggtaaattagaatctggcaacagtggaagtttgtcttta
tcattattggagaagatccgcattgcttttgaaaaaatgatctgtcagcctgccttttct
gaactgttggctcagtattcaaaacggggttacagtgaggggaaggaactaaaaagtctc
attctcaatgatctgtattatcatctacagggggagtttgaaggccgtaaaattggtcct
gggccattcaaagaactctctctgtatctggttgaatcaaaatttttagagacatataaa
aaaaaatacaatgatgcatgtcttacagataccaaaaacatctacttgtatgacctcact
cgtatacaaacagagttgggactacatatgtgggattatacagagtggaaagaacataaa
ggaactgcagaaaaaatgttggattgcatgcagcaagtgaattcaatggttttgctttcg
agttcaaaacattccacgctgaaagcattgataactgtcttgactctgtatgaagataat
ttgccagagaaagaggctacaacttgtgggaagatccctgatcaactctgcttttcatgc
attgaccatatatgccgatgtttccatgacactgtagaatcattggctcccactcttgat
gcctctgaagagattcttgatttcctttcagcacaagcagaactacttctccatcttgta
agatcagcccagggtagcttgtctgtatctgcttgtgtaattgtcttgaaaacttcaggt
tctggccttagaatgcttagtgacttctggtctgcgattagtgggattaaaaagacaatg
aaggtcctgcttatgctgcttctctttgctgtggagtccagcattactccagataagaaa
tctgaaggctttgcagaggtttcaaatgtttgcctcagcctattgcctattttgtgtaac
tgcattactactgctgagcattctagcctctccttgactgccattgacttaatactgaga
actcttttgacccccaagacttggtttcccatcatacagaaacatctccgtttgcaacat
gttattttgaagcttcaagatgacaattctcttgcatccattccgacaacattgaagttc
cttttgactctggcgcatgtgagaggaggtgctgaaatgctccttaatgctggttttttc
tcttctctaaaggcattatttggcaacttattggatgataggccttccgctgtgaacacc
aacaccaacaacagcttcccaaagtcatctgaaaaagatgaaaagcctcaatgcatttgg
ggtcttggcttggctgtggtcatagctatgattcattctttgggggatagttgtactgat
ctcatggacaatgtaataccttacttgttttcggagaaagcttacttgatttcttattac
cttgatgcacctgattttccaactgatagtcatgacaagaaaagactgcgggcgcagagg
acacagacttctctaagtactctcaaggaaacagagcatactcttatgttgatgtgcact
atagcaaaacattggaatttgtgggttaaggccatgaaagaaacggattccccattgcga
gagaaaagtatccatttgttggcctttattagccgaggaatgcatcgtcttggagaatct
cctggccgaactgcccctcttctatgtcctcccatcctcaaagaggaatttgagagctgc
aagaagccagcatttctaaactgcaggaatgggtggtttgctctttcacccatttgttgc
gcttcaaagcagaagctccccactgcctcagccaccagtactgctcttgtaatcaagggt
caatcaactgaaactgctaatccagtttctccaacgtatttctcggacttgctagccttg
cagatctatagaattgcatttcttctattgaaatatctttgtttggaagctgaggctgct
gttaaaagatcagaggaagtgggattttttgatctcgctcatattcccgagcttccaatg
cctgagatattacatggtttgcaggatcaagctgttgctattgtttctgaagtgtgcaat
gcaaacaagtcgaagcaaattcatcctgaaatccagtcagtctgcctcttactgcttcag
ataatggagatggcattatatttagaactttgtgttttacaaatctgtggaatacgacca
gtattaggacgagtggaggatttctcgaaggaagtcaaattgttgttaatagccatggag
gggcatgtattctcaaaagcatcagtaaaatccttgaaacagataatatctcttgtgtat
cccggattattacaaaccgaaggtttgttgtga
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