Jatrophihabitans cynanchi: M6B22_08965
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Entry
M6B22_08965 CDS
T09893
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
jcy
Jatrophihabitans cynanchi
Pathway
jcy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jcy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M6B22_08965 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jcy03021
]
M6B22_08965 (rpoB)
03400 DNA repair and recombination proteins [BR:
jcy03400
]
M6B22_08965 (rpoB)
Enzymes [BR:
jcy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M6B22_08965 (rpoB)
Transcription machinery [BR:
jcy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M6B22_08965 (rpoB)
DNA repair and recombination proteins [BR:
jcy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M6B22_08965 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WAX58877
UniProt:
A0ABY7K5S3
LinkDB
All DBs
Position
complement(1851240..1854686)
Genome browser
AA seq
1148 aa
AA seq
DB search
MAVSRSGKSSSTHGKSFGIPGSPPRTSFAKIREPLEVPNLLALQTESFDWLVGNEAWQAR
ISDSTTPEHSGLAEILTELSPIEDFSGSMSLSFSNPRFEDVKASIEECKDKDMTYAAPLF
VTAEFTNNTTGEIKSQTVFMGDFPMMTRKGTFVINGTERVVVSQLVRSPGVYFDRTIDKA
SDIDVYSVKVIPGRGAWLEFDVDKRSTVGVRIDRKRRQPVTVLLKALGWTEDRIREHFSW
SKLITDTLDKDHIASSDEALLDIYRKLRPGEPPTRESAQALLENLFFNPKRYDLAKVGRY
KANKKLGVDAPISTGTLTEDDIVRTIEYLVHLAQGDEGYETDDIDHFGNRRLRTVGELIQ
NQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTSQLSQFMDQTNPL
AGLTHKRRLSALGPGGLSRDRAGMDVRDVHPSHYGRMCPIETPEGPNIGLIGSLASYGRV
NAFGFIETPYRKVTAGRVTDQIDYLSADEEDKHVIAQANAIIDADGNFTEGKVLCRKKGG
EVDLIEPDDVDYMDVSPRQMVSVASAMIPFLEHDDANRALMGANMQRQAVPLLRSESPLV
GTGMELRAAVDASDVLTAEKAGVVTDLSADYITVMADDGTHQTYRLAKFARSNQGTSFNQ
KPIVNEGDRVEVGQVLADGPSTDNGEMALGKNLLVAYMPWEGHNYEDAIILNQRLVQDDV
LTSIHIEEHEVDARDTKLGAEEITRDIPNVSEEVLADLDERGIVRIGADVVPGDVLVGKV
TPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEAGKVIGVRVFSREDGDELPAGVN
ELVRVYIAQKRKIQPGDKLAGRHGNKGVISIILAPEDMPFLEDGTPVDIVLNPLGVPSRM
NVGQVLESHLGWVAKTGWQVEGKPKWAAHLPEHAWQGDPDTKVATPVFDGAREEEITGLL
ASTKATRDGVQLIGSTGKARLFDGRSGEPFPEPVSVGYTYILKLLHLVDDKIHARSTGPY
SMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYALQELLTIKSDDILGRVKVYEAIVKG
ENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGQTVEMRDTDDDVYRAAEELGIDLSRRF
EPSSVEEV
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
ttggcagtctcccgctccggtaagtcaagttccacacacggcaagtcgttcggtatcccg
ggttcaccgccccggacgtccttcgccaagatccgcgagccgctggaggtgccgaacctc
ctcgcgttgcagaccgagtccttcgactggctggtcggcaacgaggcctggcaggcgcgc
atctccgactcgaccacaccggagcactccggtctggccgagatcctcaccgagctgtcc
ccgatcgaggacttctccggctcgatgagcctgtccttctccaacccgcgcttcgaggac
gtcaaggcgtcgatcgaggagtgcaaggacaaggacatgacctacgcggccccgttgttc
gtcacggccgagttcaccaacaacaccaccggcgagatcaagagccagacggtgttcatg
ggcgacttcccgatgatgacccgcaagggcaccttcgtgatcaacggcaccgagcgcgtg
gtcgtcagccagctggtccgctcgcccggcgtctacttcgaccggacgatcgacaaggcg
tcggacatcgacgtctactccgtcaaggtcatcccgggccgcggcgcgtggctggagttc
gacgtcgacaagcgctccaccgtgggcgtccgcatcgaccgcaagcgccggcagccggtc
accgtgctgctgaaggcgctcggctggaccgaggaccggatccgcgagcacttcagctgg
tccaagctgatcaccgacaccctcgacaaggaccacatcgcgtcctcggacgaggcgctg
ctggacatctaccgcaagctgcgcccgggcgagccgccgacgcgcgagtcggcgcaggcg
ctgctggagaacctcttcttcaaccccaagcgctacgacctggccaaggtgggccgctac
aaggccaacaagaagctgggcgtcgacgcgccgatctcgaccggcacgctcaccgaggac
gacatcgtccgcaccatcgagtacctggtgcacctcgcgcagggtgacgagggctacgag
accgacgacatcgaccacttcggcaaccgccggctgcgcacggtcggcgagctgatccag
aaccagatccgggtcgggctgtcccgcatggagcgcgtcgtccgcgagcggatgaccacc
caggacgtcgaggcgatcacgccgcagaccctgatcaacatccggccggtcgtcgcctcc
atcaaggagttcttcggcaccagccagctgtcgcagttcatggaccagaccaacccgctc
gccggtctgacccacaagcgccggctgtccgcgctcggcccgggtggcctgtcccgcgac
cgagccggcatggacgtccgcgacgtgcacccgtcgcactacggccgcatgtgcccgatc
gagacgccggaaggcccgaacatcggcctgatcggctcgctcgcgtcctacgggcgggtg
aacgccttcggcttcatcgagacgccgtaccgcaaggtcaccgccggccgggtcaccgac
cagatcgactacctgtccgccgacgaggaggacaagcacgtcatcgcccaggccaacgcg
atcatcgacgccgacggcaacttcaccgagggcaaggtgctgtgccgcaagaagggcggc
gaggtcgacctgatcgagccggacgacgtcgactacatggacgtctcgccgcgccagatg
gtgtcggtcgcgtccgcgatgatcccgttcctcgagcacgacgacgcgaaccgggccctg
atgggcgccaacatgcagcgccaggcggttccgctgctgcgttcggagtcgccgctggtc
ggcaccggcatggagctgcgcgccgcggtcgacgcgtccgacgtactcaccgccgagaag
gccggcgtggtcaccgacctgtccgccgactacatcacggtgatggccgacgacggcacg
caccagacgtaccggctggccaagttcgcccgctccaaccagggcaccagcttcaaccag
aagccgatcgtcaacgagggcgaccgggtcgaggtgggccaggtgctcgccgacggtccg
tcgacggacaacggtgagatggcgctgggcaagaacctgctggtcgcctacatgccgtgg
gagggccacaactacgaggacgcgatcatcctcaaccagcgtctcgtgcaggacgacgtg
ctcacctcgatccacatcgaggagcacgaggtcgacgcgcgcgacaccaagctgggcgcc
gaggagatcacccgggacatcccgaacgtctccgaagaggtgctggccgacctcgacgag
cgcggcatcgtgcgcatcggcgccgacgtcgtgcccggcgacgtcctggtcggcaaggtg
acgccgaagggcgagaccgagctgaccccggaggagcggctgctgcgcgcgatcttcggc
gagaaggcccgcgaggtccgcgacacgtcgctgaaggtcccgcacggcgaggccggcaag
gtcatcggcgtccgggtgttcagccgggaggacggcgacgagctgcccgccggggtgaac
gaactggtccgcgtctacatagcccagaagcgcaagatccagccgggcgacaagctggcc
ggccggcacggcaacaagggcgtcatctcgatcatcctggcgccggaggacatgccgttc
ctcgaggacggcaccccggtcgacatcgtgctcaacccgctcggcgtgccgagccggatg
aacgtcggccaggtgctcgagtcacacctgggctgggtggccaagaccggctggcaggtc
gagggcaagcccaagtgggccgcccacctgcccgagcacgcctggcagggcgacccggac
accaaggtcgcgacgcccgtcttcgacggtgcgcgcgaggaggagatcaccgggctgctc
gcctcgaccaaggcgacccgcgacggcgtccagctgatcgggtccaccggcaaggcgcgg
ctgttcgacggccgctccggcgagccgttcccggagccggtcagcgtcggctacacctac
atcctcaagctgctgcacctggtcgatgacaagatccacgcccgctcgaccggcccgtac
tcgatgatcacccagcagccgctgggcggtaaggcacagttcggtggccagcgcttcggt
gagatggagtgctgggcgatgcaggcctacggcgccgcgtacgcgctgcaggaactgctc
accatcaagtccgacgacatcctcggccgggtcaaggtgtacgaggcgatcgtcaagggc
gagaacatccccgagccgggcattccggagtcgttcaaggtgctgctgaaggaacttcag
tcgctgtgcctgaacgtcgaggtgctctccagcgacgggcagacggtcgagatgcgcgac
accgacgacgacgtgtaccgcgccgccgaagagctcggcatcgacctgtcccgccggttc
gaaccgtccagcgtcgaagaagtctga
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