Jonesia denitrificans: Jden_1043
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Entry
Jden_1043 CDS
T00972
Name
(GenBank) RNA binding metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
jde
Jonesia denitrificans
Pathway
jde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Jden_1043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jde03019
]
Jden_1043
Messenger RNA biogenesis [BR:
jde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Jden_1043
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
KH_1
HDOD
Phage_Gp23
KH_PNO1_2nd
KH-I_KHDC4-BBP
KH_NusA_C
KH_NusA_2nd
Phage_VG64
PFF1_TM
Motif
Other DBs
NCBI-ProteinID:
ACV08699
UniProt:
C7R3G3
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All DBs
Position
1110899..1112365
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AA seq
488 aa
AA seq
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MNLDESGFIVATLLIALIALLLVLAARRDAQVVRDNARTDADHLIASAERRDKESRDRES
RLDERERQLDEARDTIATEQRDIAEQRERLDRDRKEHQSQLSAQHRQLTAELERISGLTA
DQATLQLREQIAADNDAYVRTALRERELLTRTKADAQARRIIADAMSRLAVPVSTQIAQE
AVELPAPEFRGRIIGKEGRNIRTFEALTGVDVILDDDSSSVVLSSFDAERRDVAVTAMKE
LIADGRIHPGRIEEVVAGARESMSSRTLNVGYDAVKAAGVGPLPTELVATIGRLRFRTSY
AQNVLDHCVETALIAGAIADELGADAAVARRAGLLHDIGKLMTAAQPGSHAKLGAQLIRD
YGESEDVAHAVRAHHGEEEFRTVEAVIVQIADSISAARPGARRDDLSSYVERVTQLEDVV
TAHEGVAHAYVVSSGHEIRVVVEPERVTDDDLHVLAGTIADAVQQHTTFPGEVAITVIRE
TRATSRAG
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaaccttgacgaatccgggtttattgtcgcaacgctacttatcgctctcatcgcgctg
cttctggttttggcagcacgccgtgacgcacaagtggttcgtgacaatgcccgaactgat
gctgaccatctcattgcctctgccgagcggcgggataaagaatcccgtgaccgagagtca
cgcctcgacgaacgtgagcggcaactcgatgaggcacgcgacacgatagcaaccgaacaa
cgcgacattgcggaacaacgggagcgccttgacagggaccgaaaggagcaccaatctcaa
ctcagtgcgcagcatcggcaactgactgcagaactggaacgaatcagtgggctcacagcc
gaccaagcaactctacagttacgtgagcaaatagcagccgacaatgatgcctatgtgcga
accgcacttcgtgagcgagaactcctgacccgaaccaaggctgacgcccaagcgcgcaga
atcattgccgatgccatgtcccggttagcagttcctgtctccacacagatcgcacaagaa
gcggtagagttgccggccccagagttccgggggcgcatcatcggtaaagaagggcgcaat
attcgcacctttgaggcgctcaccggtgtggatgtgatccttgatgacgactcatcaagt
gtggtgctgtcatccttcgatgcagagcgcagggatgtagctgtgaccgccatgaaggaa
ctgatcgctgacgggcgaatccaccccgggcgcattgaagaagtcgttgccggtgctcga
gagtcaatgtctagccgtactttgaatgttggatatgacgcggtcaaggctgctggggtt
ggtccactgcccacagaactggttgcgacgatcggacggttacggtttcgaacctcttac
gctcaaaacgttctcgatcattgtgtggaaaccgcactcattgcgggagcgatcgccgac
gagcttggagctgacgctgccgttgcgcgacgcgctggtttgctccacgatattggaaaa
cttatgaccgcggcccaacctggttcccatgcgaagttaggtgcgcaactgatccgtgac
tatggtgagagcgaagacgtcgcacatgcggtgcgcgcccaccatggtgaagaggaattc
cgcaccgttgaagcggtcatcgtccagatcgccgattctatctccgctgcacgcccaggt
gctcgacgcgacgacctgtcgagctatgtggaacgtgtcacacaactggaagacgtggtt
actgctcacgagggtgtcgctcatgcctacgtggtgtcttcggggcatgagatccgggtt
gtggtcgagccggaacgtgtcacagatgatgaccttcatgtactggcgggaaccattgct
gatgcggtgcagcagcacacaacgtttcctggtgaagttgccattactgttatccgtgaa
acgcgcgccacctccagggcaggttag
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