Jeongeupia sp. HS-3: JHS3_31840
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Entry
JHS3_31840 CDS
T08604
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
jes
Jeongeupia sp. HS-3
Pathway
jes03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JHS3_31840 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jes03021
]
JHS3_31840 (rpoB)
03400 DNA repair and recombination proteins [BR:
jes03400
]
JHS3_31840 (rpoB)
Enzymes [BR:
jes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JHS3_31840 (rpoB)
Transcription machinery [BR:
jes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JHS3_31840 (rpoB)
DNA repair and recombination proteins [BR:
jes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JHS3_31840 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Sororin_C
Motif
Other DBs
NCBI-ProteinID:
BCL77448
LinkDB
All DBs
Position
3383599..3387771
Genome browser
AA seq
1390 aa
AA seq
DB search
MNYSFTEKKRIRKSFAKRASVLDVPFLLATQLNSYSEFLQLGTPVAERNANGLQAAFSSI
FPIQSHNGNARLEFVHYVLGDPPFDVTECQQRGITFAAPLRARVRLVIMDREASKPTVKE
VKEQDVYFGEIPLMTRTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARI
IPYRGSWLDFEFDPKDLLFFRIDRRRKMPVSVLLKALGFTPEEILERFYDTDTFTIGEEG
LEMSLVPERLKGEVAKFDIVSSDGKVLAQKDKRITAKTIRDIQAAGITSLPVPADFLYGR
ILAHAVVHPETGEVLARGNEEITEDLAAKLDIAGVTEMKVLYVNDLDQGAFISQSLRSDD
VNDQYGARVAIYRMMRPGEPPTEDSVQALFNGLFFSEDRYDLSAVGRMKFNSRAYLAPRD
EKTPGWMRQFYERVGEMGLEGPGVLSVDDILAVISILVELRNGRGDVDDIDHLGNRRVRS
VGELAENQFRAGLVRVERAVKERLSQAESDNLMPHDLINAKPVSAAVKEFFGSSQLSQFM
DQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL
SCYARTNHYGFLETPYRKVIDGKTTSDIDYLSAIEEGKYVIAQANAQTDDEGRLTDDMVT
CREHGETIIATPDRVQYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPVLRA
EKPFVGTGIERTCAVDSGTAVAALRGGIVDYVDANRVVVRVNDDETLPGETGVDIYNLVK
FTRSNQNTNINQRPVLRRGDRITRGDVVADGASTDLGEMALGQNMTIAFMPWNGYNFEDS
ILISEKVVAEDRYTSIHIEELSVMARDTKLGPEEITRDISNLSERMLGRLDESGVVYIGA
EVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFT
REGVERDKRAQAIIDEQLRRHRTDLNDQLRIVENDLFERIERMIVGKVANGGPKRLLKGT
EISHDYLADLPSKHDWFDIRLSDEESARQLEAMKDLIAQMKADFDLKFEDKKRKLTQGDE
LPPGVIKMVKVYVAVKRRLQPGDKMAGRHGNKGVVSKILPVEDLPYMADGSTVDIVLNPL
GVPSRMNIGQILEVHLGWAAKGIGQRIDAMLRQQRNIAEMRDYLDRIYNSAGKQEDIAGL
SEAEVVQLAQGLRTGMTFASPVFDGAKESEIHQMLELAYPDEDPRTQLLDFNSSKTQMQL
FDGRTGEPFERKVTVGVMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE
MEVWALEAYGAAYTLQEMLTVKSDDVNGRTKVYENIVKGDHRIDAGMPESFNVLVKEIRS
LGIDIDLETE
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgaattactcgttcacagagaagaaacgcattcgtaagagctttgcgaagcgggcgagc
gttctggacgttccgtttctcctcgcgacccaactcaactcgtattccgagtttctgcaa
ttgggtacgccggttgcggagcggaatgcgaatggcctgcaagcggcattcagctcgatt
ttcccgattcagtcgcacaacggcaatgctcgtctcgagttcgtgcactacgtgctcggc
gatccgcctttcgacgtgaccgagtgtcagcagcgtgggattaccttcgctgcgccgttg
cgtgctcgcgttcgtctggtgatcatggatcgtgaggcgagcaagccgacggtgaaggaa
gtcaaggagcaggacgtgtacttcggcgaaattccgctgatgacccgtactggctcgttt
gtgatcaacggcaccgaacgtgtgatcgtttcgcagctgcatcgctcgccaggcgtgttc
tttgagcacgataagggcaagacccatagctcgggcaagttgttgttctcggctcggatc
attccgtaccgcggctcgtggctggatttcgagttcgacccgaaggatctgctgttcttc
cgtatcgaccgccgtcgcaagatgccggtttcggtgctgctgaaggcactgggctttacg
ccggaagaaattctcgagcgcttctacgataccgacaccttcaccatcggtgaagaaggt
ctcgagatgtcgctggtgccggaacgcctgaagggcgaagtcgccaagttcgacatcgtg
tcgagcgacggcaaggtgctggcacagaaagacaagcgcatcactgccaagaccatccgc
gacatccaggctgcgggcattacctcgctgccggtgccggcggatttcctctatggccgt
attctggcccatgccgttgtgcacccggaaaccggtgaagtgctggcgcgtggcaacgaa
gaaatcaccgaagatctcgccgccaagctcgatattgctggcgtcaccgagatgaaggtg
ttgtacgtcaacgatctggatcagggcgcgttcatttcgcaaagcttgcgttcggacgac
gtcaacgaccagtacggcgcgcgcgttgcgatctatcgcatgatgcgtccgggcgagccg
ccgaccgaagattcggtccaggcgctgttcaacggtctgttcttctccgaagatcgttac
gacctgtcggccgtgggccggatgaagttcaacagccgtgcttatcttgccccgcgcgat
gaaaagaccccgggctggatgcgccagttctacgagcgcgtcggcgaaatgggcctggaa
ggtccgggcgtgctgtcggttgacgacatcctcgcggtgatcagtattctggttgagctg
cgtaacggtcgtggcgacgtcgacgatatcgatcacctcggcaaccgccgtgtgcgttcg
gtcggcgaactggccgagaaccagttccgcgccggtctggtgcgcgtcgagcgcgccgtg
aaggagcgtctgtcgcaggccgagtccgacaacctgatgccgcatgacctgatcaatgcc
aagccggtttcggccgcggtcaaggaattcttcggctcgtcgcagctgtcgcagttcatg
gaccagaccaacccgctgtcggaaattacccacaagcgccgtgtttcggctcttggtcca
ggcggtctgacgcgcgagcgcgccggctttgaagtccgtgacgtgcatccgactcactat
ggtcgcgtttgcccgatcgaaacgccggaaggcccgaacatcggtctgatcaactcgctg
tcgtgctacgcccgcaccaaccattacggtttcctcgagacaccgtatcgcaaggtgatt
gacggcaagaccaccagcgacatcgattacctgtcggcgatcgaagaaggcaagtacgta
attgcgcaggccaatgcgcaaaccgacgacgaaggccgtctgaccgacgacatggtgacc
tgccgcgaacacggtgaaaccattatcgcgacgccggatcgcgtccagtacatggacgtc
gcgccgagccagatcgtgtcggttgccgcttcgctgattccgttccttgaacatgacgat
gcaaaccgcgcactgatgggcgccaacatgcagcgtcaagccgtgccggtgctgcgtgcc
gagaagccgttcgtcggtaccgggatcgagcgcacttgcgcggtcgactcgggtacggct
gtggctgcactgcgtggcggtatcgtcgattacgtcgatgccaaccgcgttgtggttcgc
gtgaatgacgatgaaaccctgccgggcgaaaccggcgtggacatctacaacctcgtcaaa
ttcacccgttcgaaccagaacaccaatatcaaccagcgtccggtgctgcgtcgcggtgat
cgcattacccgcggtgatgtggtggccgatggtgcatcgaccgatctgggcgaaatggct
ttgggtcagaacatgaccatcgccttcatgccgtggaacggctacaacttcgaagattcg
atcttgatctccgagaaggttgttgccgaagaccgctatacctcgattcacatcgaagaa
ttgtcggtcatggcgcgcgataccaagctcggccctgaagaaatcacccgcgacatctcc
aacctgtccgagcgcatgctcggccgtctggacgagtcgggcgtggtgtacatcggcgcc
gaagtcgaagccggtgacgtgctcgttggtaaggtcacgcctaagggtgaaacccagctg
acgccggaagaaaagctgctgcgcgcgatcttcggcgaaaaagcctccgacgtgaaggac
acgagcttacgcgtgccgtctggcatgaccggtaccgtgatcgatgtgcaagtgtttacc
cgtgaaggcgtcgagcgcgacaagcgcgctcaggccatcatcgacgaacaactgcgccgt
catcgtaccgacctgaacgaccagctgcgcatcgttgaaaacgacctgttcgagcggatc
gagcggatgatcgttggcaaggtcgccaacggtggtccgaagcgtctgctcaagggtacc
gagatcagccacgattacctggccgatctgccgtccaagcacgactggttcgacattcgt
ttgtcggatgaagaaagcgcacgccagctcgaagcgatgaaggacttgatcgctcagatg
aaggccgacttcgacctcaagttcgaagacaaaaagcgcaagctcacccagggcgacgaa
ttgccgccgggcgtgatcaagatggtcaaggtctacgttgcggtgaagcgtcgtctgcag
ccgggcgacaagatggccggccgtcacggtaacaagggtgtggtttcgaagattctgccg
gtcgaagatctgccgtacatggccgacggttcgaccgtcgacatcgtgctgaacccgctc
ggcgtgccgtcgcggatgaacatcggccagattctggaagtccacctcggttgggcggcc
aaggggatcggccaacgcatcgatgcgatgctgcgtcaacagcgcaatatcgccgaaatg
cgcgattacctcgaccgcatctacaacagcgccggcaagcaagaagacatcgccggtctg
tccgaagccgaagtggtgcaactggcccaaggtctgcgtaccggtatgacttttgccagc
ccggtgttcgacggtgccaaggaatccgagattcaccagatgctcgagttggcgtatccg
gatgaagatccgcgcacccaactgctggacttcaacagcagcaagacgcagatgcagctg
ttcgatggccgcaccggcgagccgttcgagcgcaaggtcaccgttggcgtgatgcattac
ctgaaactgcatcacttggtcgacgacaagatgcacgcacgttcgaccggtccgtactcg
ctggtcacgcagcagccgctgggtggtaaggcgcagttcggtggtcagcgcttcggggaa
atggaagtctgggcgctcgaagcctatggcgcggcgtacacgctgcaggaaatgctgacg
gtgaagtcggatgatgtgaacggtcggaccaaggtctacgaaaacatcgtcaagggcgat
caccggatcgatgccggcatgccggaatccttcaacgtgctggtgaaggaaatccgttcg
ctgggtatcgatatcgatctggaaaccgagtga
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integrated database retrieval system
