Janthinobacterium lividum: G3257_02865
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Entry
G3257_02865 CDS
T06723
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
jlv
Janthinobacterium lividum
Pathway
jlv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jlv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G3257_02865 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jlv03021
]
G3257_02865 (rpoB)
03400 DNA repair and recombination proteins [BR:
jlv03400
]
G3257_02865 (rpoB)
Enzymes [BR:
jlv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G3257_02865 (rpoB)
Transcription machinery [BR:
jlv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G3257_02865 (rpoB)
DNA repair and recombination proteins [BR:
jlv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G3257_02865 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
DNAPolymera_Pol
Motif
Other DBs
NCBI-ProteinID:
QKY01302
LinkDB
All DBs
Position
654215..658321
Genome browser
AA seq
1368 aa
AA seq
DB search
MHYSFTEKKRIRKSFAKRANVHHVPFLLATQLESYHSFLQEDIAPSGRKNDGLQSAFTSI
FPIVSHNGFARLEFLSYVLGDPAFDVKECQQRGLTFASPLRAKVRLVILDKESPTKPVVK
EMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILLKAIGMSHEQILANFFVFDNFNLRSE
GAEMEFVSERLRGEVARFDIVDKSGKTLVLKDKRINAKHVRDIEAAGIKHISVPEDYLLG
RVLAKNIVDGDTGEVVASANDELTEDLLGRLRDANISEIQTLYTNDLDQGAYISQTLRID
DTADQMAAKVAIYRMMRPGEPPTEDSVEALFNGLFYNSDRYDLSAVGRMKFNRRIGRDEL
TGAMTLSNEDVLAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKV
EGSKITDQIDYLSAIEEGRYIIAQANATINDEGMLSDELVSAREAGETILVSPERIQYMD
VAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKALVGTGIERTVAVDSGT
TVQALRGGIVDYIDAGRVVIRVNDDEATAGEVGVDIYNLIKYTRSNQNTNINQRPIVQVG
DRVAKRDVIADGASTDLGELALGQNMTVAFMPWNGLNFEDSILISENVVKDDRYTSIHIE
ELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEVQAGDTLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMIGTVIDVQVFTREGIVRDKRAQQIIDDELK
RFRLDLNDQMRIVEGDAFQRLEKMLIGKVVNGGPKKLAKGAKITKDYLADLDKYHWFDIR
PADDDAAVALEAIKESINEKRHQFDLAFEEKRKKLTQGDELQPGVQKMVKVYLAVKRRLQ
SGDKMAGRHGNKGVVSRIVPVEDMPYMADGTPADVVLNPLGVPSRMNVGQILETHLGWAA
KGLGIRIGEMLKAQTKVEQVRKYLTTIYNDNGRAEELNDFDDEEIMKLAENLKKGVPFAT
PVFDGANEEEIRRMLDLAYPDDIAKNLGMTASKNQVTMYDGRTGEAFERKVTVGVMHMLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERN
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcactactcatttactgagaagaaacgcattcgcaaatcattcgcgaagcgcgccaac
gttcaccacgttccgttcctgctggcgacccagctcgagtcttatcatagcttcttgcaa
gaggacatagcaccgtccggccgcaagaatgatggcctgcagtcggctttcacttcgatt
ttccctatcgtgtcgcacaatggttttgcgcgcctcgaattcttgtcgtacgttctgggc
gatcctgccttcgacgtcaaagaatgtcaacaacgtggcctgacgttcgcgtcgccgctg
cgcgcgaaagtgcgcctggtgatcctggacaaggaatcgccaaccaagcccgtcgtcaaa
gagatgaaggaacaggaagtctacatgggcgaattgccgctcatgacgaccaccggttcg
ttcgtgatcaacggcacggagcgggttatcgtttcccagttgcaccgttcgcctggcgtg
ttcttcgagcacgaccgcggcaagacccactcgtccggcaaactgctgttctccgcgcgt
atcattccttaccgcggttcgtggctggacttcgagttcgacccgaaagacatcctgttc
ttccgcgtcgaccgccgccgcaagatgccagtcacgatcctgctcaaagccatcggcatg
tcgcatgagcaaatcctggcgaacttcttcgtcttcgacaatttcaacctgcgctccgaa
ggcgcggaaatggaattcgtctccgagcgtctgcgcggcgaagtggcgcgtttcgacatc
gtcgacaagtcgggcaagaccctggtgctgaaagacaagcgtatcaacgcgaaacacgtg
cgtgatatcgaagctgccggcatcaagcacatttccgtaccggaagactacctgctgggc
cgcgtattggcgaagaacatcgtcgatggcgataccggtgaagtcgtcgcttccgcgaac
gatgagctgaccgaagatctgttgggccgcctgcgcgatgccaacatttccgaaatccag
accttgtatacgaacgacctggatcagggcgcctacatctcgcaaaccctgcgtatcgac
gacaccgccgatcagatggctgcgaaagtggcgatctaccgcatgatgcgtccaggcgaa
ccgccaacggaagattccgttgaagcgctgttcaatggcctgttctacaactcggaccgc
tacgacctgtcggccgtgggccgcatgaagttcaaccgccgcattggccgcgatgaactg
accggcgccatgaccctgtcgaacgaagacgtgctggccgtgatcaagatcctggtggaa
ctgcgcaatggccgcggcgaagtcgacgatatcgatcacttgggtaaccgtcgcgtacgt
tgcgtgggcgaactggccgagaatcaattccgcgccggcctggtgcgtgttgagcgcgcc
gtcaaggaacgcctcggccaagccgaagcggacaacctgatgccgcacgacctgatcaac
tcgaagccgatttcggccgcgattcgcgagttcttcggttcgtcccagctgtcgcagttc
atggaccaaaccaatcctctgtcggaaattacccacaagcgccgcgtatcggctctggga
cccggcggtctgacacgcgaacgcgccggctttgaagtgcgcgacgtgcatccgacccac
tacggccgcgtctgcccgatcgagacaccggaaggtccgaacattggtctgatcaactcg
ctggctctgtatgcccgcctgaatgaatacggcttcctggaaaccccgtaccgcaaggtc
gaaggctccaagattaccgatcagatcgactacctgtccgccatcgaagaaggccgctac
atcatcgctcaggcgaatgcgaccatcaacgacgaaggcatgctgtccgatgaactggtc
tcggcccgtgaagccggcgaaaccatcctggtctccccggagcgcatccagtacatggac
gtggcgccaggccagatcgtttccgttgctgcctcgctgattccgttcctcgaacacgat
gatgcaaaccgtgcattgatgggcgccaacatgcaacgccaggctgtgccttgcttgcgt
ccggaaaaagcgctggtcggtaccggtatcgaacgcactgttgcggtcgactcgggcacc
accgtgcaagcgctgcgtggcggtatcgtcgattacatcgatgcgggccgtgtcgtgatt
cgcgtcaacgatgacgaagctaccgctggtgaagtgggcgtcgacatctacaacctgatc
aagtacacccgttcgaaccagaacaccaacatcaaccagcgtcctatcgtgcaagtgggc
gaccgtgttgccaagcgcgacgtgatcgccgacggcgcatcgaccgacctgggtgaattg
gctctgggccagaacatgaccgtggccttcatgccatggaatggtctgaacttcgaagat
tcgatcctgatctcggaaaacgtcgtcaaggacgaccgctacacctcgattcacatcgaa
gagttgtcggttgttgcccgtgacacgaaactgggcgcggaagaaattacgcgcgacatc
tcgaacctggctgaaaatcagctggcacgtctggatgagtccggtatcgtctacatcggc
gctgaagtacaagccggcgataccctggttggtaaagtgacgccaaaaggcgaaacccag
ctgaccccggaagagaagctgctgcgcgcgattttcggcgaaaaagcatcggacgtgaaa
gatacgtcgctgcgcgtgccttcgggcatgatcggtaccgtgatcgacgtgcaagtcttc
acccgtgaaggcatcgtgcgcgacaagcgtgcccagcaaattatcgatgacgaactgaaa
cgcttccgtctggatttgaacgaccagatgcgtatcgttgaaggcgatgccttccagcgt
ctggaaaaaatgctgatcggcaaagttgtcaacggcggccctaaaaagctggccaaaggc
gccaagatcaccaaggattacctggccgatctggacaaataccactggttcgacatccgc
cctgcggacgacgatgcagcggtagcgctggaagcgatcaaggaatcgatcaacgagaag
cgtcaccagttcgatctggccttcgaagagaagcgcaagaaactgacgcaaggcgatgag
ctgcaaccaggcgtgcaaaaaatggtcaaggtgtacctggccgtgaaacgccgcctgcag
tcgggcgacaagatggcaggtcgccacggtaacaagggtgtggtttcccgtattgttcct
gtggaagacatgccatacatggccgacggcacgccagccgacgttgtgctgaacccgctg
ggcgttccttcgcggatgaacgttggtcagattctcgagactcacttgggctgggctgcc
aagggtctgggtatccgcatcggcgaaatgctgaaggcgcaaaccaaggtcgagcaagtg
cgcaagtacctgacgacgatctacaacgacaacggccgtgccgaagagctgaacgacttc
gacgacgaagagatcatgaagctggcggaaaacttgaaaaaaggtgttccattcgccacg
ccagtgttcgacggcgccaatgaagaagagatccgccgcatgctggacctggcgtatccg
gacgacatcgccaagaacctgggcatgaccgcttcgaaaaaccaggtgaccatgtatgac
ggtcgcaccggtgaagcgttcgaacgcaaggttactgtcggcgtcatgcacatgctgaaa
ctgcatcacttggtggatgacaagatgcatgcgcgttcgaccggtccttactcgctggtg
acgcaacagccactgggcggtaaagcccagttcggtggtcagcgtttcggtgagatggaa
gtctgggcactggaagcgtatggcgcgtcgtatgtcttgcaagagatgttgaccgtcaag
tccgatgacgtgaatggccgtaccaaagtgtacgagaacctcgtcaagggcgaccacgtg
atcgacgccggcatgccggaatcgttcaatgtgctggtcaaggaaatccgttcgctgggt
atcgatatcgacctcgaacgcaactaa
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integrated database retrieval system
