Janthinobacterium lividum: G3257_02870
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Entry
G3257_02870 CDS
T06723
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
jlv
Janthinobacterium lividum
Pathway
jlv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
jlv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G3257_02870 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jlv03021
]
G3257_02870 (rpoC)
03400 DNA repair and recombination proteins [BR:
jlv03400
]
G3257_02870 (rpoC)
Enzymes [BR:
jlv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G3257_02870 (rpoC)
Transcription machinery [BR:
jlv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G3257_02870 (rpoC)
DNA repair and recombination proteins [BR:
jlv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G3257_02870 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
PYNP_C
Myosin_VII_N
Motif
Other DBs
NCBI-ProteinID:
QKY01303
LinkDB
All DBs
Position
658444..662685
Genome browser
AA seq
1413 aa
AA seq
DB search
MKALLDLFKQVQTNETFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFTAFM
GAEGIRELLRSIDIHRDAETLRVELKESKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEIQEPVVWDILEDVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINAKNEGMMFPDVSEVIRAYDNK
EVELTTRVTVRITEYPKNAETGEFEKTVTRYETTIGRAILSEILPKGLPFSVLNRALKKK
EISKLINTSFRKCGLRATVVFADKLMQSGFRLATRAGISICVDDMLVPPQKVTLIATAES
EVKQIEQQYASGLVTAGERYNKVVDIWGKTSDEVGKAMMDQLKVEDVIRRDGTKSTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTMNGAVMKALVEGGEVIEPLRDRI
LGRVVVHDVVNPETQETLYEAGTLMDEDMVEEIERLSIDEVKVRTPLTCDTRFGLCAKCY
GRDLGRGMLVNAGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTIR
FTATMRYVTNGKGAQIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGMVIKAGTALA
TWDPLTRPIITEYAGQVRFENVEEGVTVARQVDEVTGLSTLVAIDAKRRGSLTKTLRPQV
KLINDANEEVKIAGTEHSVAIGFQVGALIMVKDGQQVSVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQIVNAGDTNYIVGEQVERSELLDENDRMAVENKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKRDGLRGLKENVIVGRLIPGGTGLAFHRARKEKEAWEVEE
RQALLLAEKASMAGEAAEALQDIETQQHHGDEA
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctattcaagcaagtacagaccaacgagaccttcgatgcaatc
aagatcggtctcgcttcgcctgagaaaatccgttcgtggtcctacggcgaagtcaagaag
ccggaaaccatcaactaccgtaccttcaagcctgagcgcgacggcctgttctgcgccaag
atctttggcccgatcaaggattacgaatgcctgtgcggcaagtacaagcgcctgaaacac
cgcggcgtgatctgcgaaaagtgcggcgtcgaagtcacgctggccaaggtgcgccgcgag
cgcatggggcacatcgagctggcctcgccgaccgcccacatctggttcctgaaatcgctg
ccgtcgcgtctgggcatggtcctggacatgaccctgcgggacatcgaacgcgtgctgtac
tttgaagcatacgtcgtgaccgatccaggcatgactccgctgaaaaagtgccagatcatg
tcggaagacgactacgccgccaagtacgaagagtacggcgacgacttcaccgccttcatg
ggcgccgaaggtatccgtgaactgctgcgctcgatcgacatccaccgcgatgccgaaacc
ctgcgcgtggaactgaaggaatcgaaatccgaagccaagatcaagaaatacgcgaagcgc
ctgaaagtgctggaagcgttccaacgttcgggcatcaagcctgactggatgatcatggaa
gtgctgccagtgctgccgccggaactgcgtccgctggtaccgctggatggtggccgtttc
gcgacctcggatctgaacgatctgtatcgccgcgtcatcaaccgtaacaaccgtctgaaa
cgcctgatggagctgcgcgctccagagatcatcacgcgcaacgaaaagcgcatgctgcaa
gaagcggtcgattcgctgctggacaacggccgtcgcggcaaagcgatgaccggcgccaac
aagcgtccgctgaaatcgctggcagagatgatcaagggcaagggcggccgtttccgtcaa
aacttgctgggcaaacgcgtcgattactccggtcgttcggtcatcgtcgtgggcccgcaa
ttgaaactgcatcagtgcggcttgccgaaactgatggcgctggaactgttcaaaccattc
attttcaataaactggaactgatgggtctggcgaccacgatcaaggccgccaaaaagctg
gtcgagatccaagagccggtcgtgtgggacatcctggaagacgtgatccgtgaacatccg
atcatgttgaaccgcgcacctaccttgcaccgtctgggtatccaggcattcgagccagtc
ctgattgaaggcaaggccatccagttgcacccgctcgtctgcgccgcattcaacgccgac
tttgacggtgaccaaatggcggtccacgttcctctgtcgatcgaagcgcagatggaagca
cgcactttgatgctggcatcgaacaacatcctgttcccatcgaacggcgaaccatcgatc
gttccttcccaggatatcgtgttgggtctgtactacgcgacccgcgaagcgatcaatgcg
aagaacgaagggatgatgttccctgacgtatcggaagtgatccgcgcctacgacaacaag
gaagtcgaactgacgacccgcgtgaccgtgcgtattaccgaatacccgaaaaacgccgaa
acgggcgaattcgagaaaacggtaacgcgttacgaaacgacgatcggccgtgcgatcctg
tcggaaattctgcctaaaggcctgccgttctccgtcctgaaccgcgcgctgaaaaagaaa
gaaatttccaagctgatcaacacgtcgttccgcaagtgcggcctgcgcgccaccgtggtg
ttcgcagacaaactgatgcaatcgggtttccgcctggcgacacgcgccggtatctcgatc
tgcgtcgacgacatgctggtaccgcctcaaaaagtgaccctgatcgcgacggccgaatcg
gaagtcaagcagatcgaacagcaatacgcctcgggtctcgtgaccgccggcgagcgttac
aacaaggtagtcgatatctggggcaagacctccgatgaagtcggcaaggccatgatggac
cagctcaaagtcgaagacgtgatccgccgcgacggcaccaagtcgacgcaagaatcgttc
aacgccatttacatgatggccgactccggcgcgcgcggttccgcagcccagattcgccag
ttggccggtatgcgtggtctgatggccaaaccggatggctcgattatcgaaacgccgatt
accgcgaacttccgcgaaggtctgaacgttttgcagtacttcatttcgacccacggcgct
cgtaaaggtctggccgatacggcgctgaaaacggctaactccggttacctgacgcgtcgt
ctggttgacgtgacgcaagacttggtggtgatcgaggacgattgcggcaccatgaacggc
gccgtcatgaaggcactggtcgaaggtggtgaagtcatcgaaccgttgcgtgaccgtatc
ctcggccgcgtggtggtgcatgacgtcgtcaatcctgaaacccaggaaacgctgtacgaa
gccggcacgctgatggacgaagacatggtcgaagagatcgagcgtctgtccatcgatgaa
gtcaaggtccgcacgccactgacttgcgacacgcgcttcggcctgtgcgccaagtgctat
ggccgcgatctgggccgcggcatgctggtcaacgccggcgaagccgtcggtgtggtggca
gcgcagtcgattggtgagcctggtacccagctgaccatgcgtacgttccacattggtggt
gcggcatcgcgtgcagcagtggcatcgtcggtggaagccaagtcgaacggtaccatccgc
ttcacggcaaccatgcgttacgtgacgaacggcaagggcgcgcaaatcgtcatttcccgt
tccggcgaagtgctgattaccgacgaccatggccgtgagcgtgagcgtcataaagtaccg
tacggtgcgaccctgatcgtcaaggacggcatggtcatcaaggccggtacggccctggca
acgtgggatccgctgacccgtccgatcattaccgaatacgccggtcaagtgcgtttcgag
aacgtcgaagaaggcgtcaccgtagcccgtcaagtcgacgaagtgaccggtctgtccacc
ctggtggcgatcgatgcgaaacgtcgcggttcgttgacgaaaacgttgcgtccgcaagtc
aagctgatcaacgacgcgaacgaagaagtcaagatcgccggcaccgaacactcggtggcg
atcggcttccaggtcggcgcgctgatcatggtcaaggacggtcaacaggtatcggttggt
gaagtgctggcacgtattcctaccgaatcgcaaaaaacgcgcgatattaccggtggtctg
ccacgcgttgcggaactgttcgaagcgcgctcgccgaaagatgccggtatgctggcggaa
gtcacgggtacggttgcgttcggtaaagaaaccaagggcaagcagcgtctggaaatcacg
gacatggacggcaacaagcatgagttcttgatcaccaaggacaaacaagtgctggtgcat
gacggccaagtcgtgaacaagggcgagatgatcgtggacggcccggccgatccgcaagac
atcctgcgcctgctgggtatcgaagcgctggcacgttacatcgttgacgaagtgcaagac
gtgtaccgtctgcaaggcgtgaagatcaatgacaagcacatcgaagtgatcgtgcgccag
atgctgcgccgtgttcagatcgtcaatgccggcgacaccaactacatcgttggcgagcag
gttgagcgttcggaactgctggacgagaacgatcgcatggccgttgagaacaagattcca
gcgacctacgaaaacgtcttgttgggtattaccaaagcatcgctgtcgaccgattcgttc
atctcggccgcatcgttccaggaaaccacccgcgtgctgacggaagcggcgatcatgggc
aagcgcgatggtctgcgcggcctgaaagagaacgtcatcgtcggccgcctgattcctggc
ggtacgggcctggccttccaccgcgcacgcaaagagaaagaagcgtgggaagtggaagag
cgtcaagcactgctgctggccgagaaagcctcgatggctggcgaagctgccgaagcgctg
caggacatcgaaacccagcaacaccacggcgacgaagcgtaa
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integrated database retrieval system
