Juglans regia (English walnut): 108996548
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Entry
108996548 CDS
T05245
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
jre
Juglans regia (English walnut)
Pathway
jre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108996548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
108996548
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108996548
mRNA degradation factors
5'-3' decay
Decapping complex
108996548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_C
Beta-prop_EML_2
Beta-prop_RIG_2nd
WD40_Gbeta
Beta-prop_WDR41
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
NRG2_N
MACPF_SNTX
Motif
Other DBs
NCBI-GeneID:
108996548
NCBI-ProteinID:
XP_035544193
UniProt:
A0A6P9EJF0
LinkDB
All DBs
Position
3:10482734..10498156
Genome browser
AA seq
1384 aa
AA seq
DB search
MASSPGNPNLLQNQIQQIDVQKLFNPSPNPPSPFPSPSGNLNSSPSFPAPSPISSAPYPM
PSSSYPPPTGPSYPFHPHFLPYPPSPLDHFQQHHQNQHQNQLLPSSARLMALLTTQNPPS
PSNSNTTLDFPQLSMPFSSPSPSSPSPLPSPSSAASNTPSSAPPPTRMLSTKLPKGRHLI
GDRVVYDIDVRLQGEVQPQLEVAPITKYGSDPGLVLGRQIAVNRSYICYGLKLGNIRVLN
INTALRSLLRGHTQRVTDMAFFAEDVHLLASAGVDGRVFIWNIHEGTDEEDKPQITGKIV
IAIQIEIDEESVHPRVCWHPHKQEILIVAIGNRILKIDTIKVGRGKVFSAEEPLKCPIDE
LIDGIQFVGKHDRQVTELSMCQWMSSRLASASMDGMVKVWEDRKALPLAVFKPHDGNPVN
SVTFLTAPHRPDHIVLITAGPLNREVKIWASAGEEGWLLPSDTESWKCTQTLDIKSSFEP
KMEDAFFNQVIALPRAGLFLLANAKKNAIYAVHIEYGPNPAATRMDYISEFTVTMPILSL
TGTSDSLPDGEHIVQVYCVQTQAIQQYALHLSQCLPPPLENVELEKSDSTVSRTFNAFDG
STSFTEMPAVNSPPMPPILSSSSEIGPVASRPANLSSSEATSMLEVAVSGLETLPTDVPS
HVTAENIHTASPPLPLSPRLTRKLSGIRSPLNSNEPNQSLTDHGGDQPAPEYSSDRGMDY
VKDNVTDVPPSDDNSRKGDKNAAQSDIPMVPNPPIVFKQPTHLVTPSELLSTVSSSSENS
QISRGVNVVEAKVQDVNVKNDAESIEVEVKVIGETRTSQNNESDCQRDSHIMVAEKKEKS
FYSQASDLGIQMARDCSVGAYNTKESSITKAPNEPPNACVEEDQGLMKDIPTKVGESETP
MAVLQSPTSALKGKRQKGKNAQASGPSSPSPSPFHSTDSLNETGGSSGAPSMEAALPHLL
PMKAMLDQLINTQKEMQKQMNVIVSGSVIKEGKRLEGSLGRSMEKVVKANTDALWARFQE
ENTKQEKLEQDRLQQITNLMTNYMNKDLPAMLEKTLKKEIALVGPAVARAITPVMEKTIS
SAVMDSFQKGVGEKAVNQLEKSVSSKLEGTVSRQIQAQFQTSGKQILQDTLRSSLEAAII
PAFEMSCKAMFEQVDVTFQKGLSKHTTAAQQQFEATLSPLAIALRDSITSASAITQTLSG
ELADGQRQLLAIAASGANSKAVNPLVTQLSNGPLAGLLEMAEAPLDPTKELSRLIAEGKF
EEAFTGALHRRDVSIVSWLCSQVDLQRILSTVPLPLSQGVLLALLQQLAYDISKEIPRKL
AWMTDVAVAIDPQDPTIAVHVHPIFEQVYQILGHQRNLPTTSASEASSIRLLMHVINSVL
MSCK
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctctcctggaaaccctaatcttcttcagaaccaaatccaacagattgatgtt
cagaagctcttcaatccctcgcccaatcctccttctccgtttccttctccttctggcaat
ctgaattcctccccatcttttcctgctcctagtccgatttcgtctgctccttatcccatg
ccgtcgtcttcttatcctccacctactggcccttcctacccttttcaccctcacttcctt
ccttatccaccatccccacttgaccatttccagcagcaccatcaaaatcagcaccagaac
cagcttcttcccagtagtgctcgtttgatggcgctcttgacgacccaaaaccctccctcc
ccctcaaattccaatactactcttgatttccctcagctctctatgcccttttcttctcca
tctccatcttcgccttcacccttgccttcaccctcttccgccgcttccaacaccccttcc
tcagcaccacctcccaccaggatgctcagcaccaaacttcccaagggacgccatttaatc
ggtgaccgcgttgtttacgacatcgatgtccgcttgcaaggcgaagtgcagccccagctt
gaagtcgctcccatcaccaagtacggctccgatcccggcctcgttctcggccgtcagatt
gccgttaatagatcttacatatgctatggcctcaagctcggtaatattcgtgtccttaac
ataaatactgcgttaagatctttgcttcgaggtcacacccagagagtaactgatatggct
ttctttgccgaggatgttcacctcttagctagtgctggtgttgatggacgagttttcata
tggaatatccatgagggcacagatgaggaagacaaacctcaaattactggcaaaattgtt
attgctatccaaatagaaatagatgaggaatcagttcacccgcgagtgtgttggcatcct
cacaaacaagaaattttgatagttgctattggaaatcgtatcctcaaaattgacaccata
aaagttggaaggggcaaggtattttcagcagaggaacctcttaaatgtccaattgatgaa
ctgattgatgggatccaatttgttggtaaacatgatcgtcaagttactgaattgtcaatg
tgccagtggatgagcagccgcttagcttcagcatcgatggatgggatggtgaaggtttgg
gaagaccgtaaggcactaccacttgcagtattcaaaccacatgatggcaatcctgttaat
tctgtgacattcttgactgctcctcaccgtcccgatcacattgttcttattacagcgggg
ccgctgaatcgggaagtgaaaatatgggcctctgcaggtgaggagggctggttgttacct
agtgatactgaatcatggaagtgcactcaaactttggatataaagagttcttttgaaccc
aagatggaggatgcattctttaatcaggtcatagcattgcctcgtgcaggcctatttcta
cttgcaaatgccaagaagaatgctatatatgctgtacacatagagtatggacctaatcca
gctgcaacccgcatggattacatttcagagtttacggtcacaatgcctatcttgagtctt
actggaaccagtgacagtctaccagatggagaacatattgtccaggtctactgcgttcag
acacaagcaattcagcaatatgcacttcacctatctcagtgcctgccaccacccctggaa
aatgtggagttggagaaatctgactcaactgtttcccgcactttcaatgcttttgatggt
tcgacttctttcactgagatgcctgcagttaattcacctcctatgccacctattctttca
agcagctctgaaatcggcccagttgctagccgtcctgcaaacttgtcttcttctgaggct
actagcatgctggaggttgctgtttctggtctggaaacattgccaactgatgtgccttct
cacgttacagctgaaaatatccacaccgcatcacctcctcttcctttgagcccaaggtta
actcgcaaattatctggtattagaagtcctttaaatagcaatgagcctaatcaatctctc
acagaccatggtggtgaccaaccagctcctgaatattcgtctgatcggggaatggactat
gtcaaagataacgtgactgatgtgcctccctcggatgataattcaaggaagggtgacaaa
aatgctgcacaaagtgatattcctatggttcccaatcctcctatagtctttaaacagcca
acacacctggtaactccatcagagttattatctactgtttcttcatcatctgagaactcc
caaattagtcggggcgtgaatgtggtagaggcaaaggttcaagatgtgaacgttaagaat
gatgctgaaagcattgaagtagaggttaaagtcatcggtgagacaagaaccagtcaaaat
aatgaatctgactgtcagagagattcccacattatggttgcagagaaaaaggagaaatcc
ttctattcccaggcatcagatcttggcattcagatggccagagattgctctgtgggagct
tataacactaaagaaagtagtattactaaggcaccaaacgaacctcctaacgcttgtgtg
gaagaagatcaaggcttgatgaaggatatacctacaaaggttggtgaatcagaaactcca
atggcagttttgcagtctccaacatcagctctgaaaggcaaaagacaaaagggcaaaaat
gctcaagcgtctggtccatcttccccttctccaagtccttttcactccactgattcatta
aacgaaacaggtggcagttcaggtgccccatctatggaagccgctttgccccacttattg
cctatgaaggcaatgcttgaccagttgataaacacacaaaaagaaatgcagaagcagatg
aatgtgatagtttctggttcagttatcaaagaaggtaaaagactagagggatccttgggc
cggagcatggagaaagttgtcaaggctaacactgatgctctgtgggctcgtttccaagag
gaaaacacaaagcaggagaagttagaacaagaccgtttgcagcagataacaaacttgatg
acgaattatatgaacaaggacttgccagccatgctcgagaaaactctaaagaaggaaata
gctttggttggaccagctgtagcacgtgcaattactccagttatggagaaaaccatttca
tcagctgttatggattcattccagaaaggagtgggagaaaaggcagtgaaccaactagag
aagtcagttagttcaaaacttgaaggtacagtgtctaggcaaattcaagcacagtttcaa
acttcagggaagcaaattcttcaggatacattaaggtctagtctcgaagctgcaatcatt
cctgcatttgagatgtcatgcaaagctatgtttgagcaagttgatgtcacattccagaaa
gggcttagtaaacatacaactgctgctcagcagcagtttgaggccacactttctccactt
gctattgctttaagggattcaattacttcagcatcggcaatcactcaaacattgagcgga
gaattggctgatggccaacgtcagctgttagccattgcagcttcaggtgctaattcgaaa
gcagtaaatcctttggtaacacagttgagcaatggaccattggcaggtcttctcgagatg
gctgaggcacctttggatccaactaaagaactatctagattgatagctgagggcaaattt
gaggaagcattcactggagccctgcacagaagggatgtctcaatagtttcatggttatgt
tctcaggttgatttacagagaattttgtcaacggtgccacttcctctaagccaaggagtt
ctgctagctcttctccagcaactggcttatgatattagcaaggaaatacccagaaagctg
gcttggatgacagacgtagctgttgccatagacccacaagatccaacgattgcagtgcat
gtgcatcccattttcgagcaggtatatcagatactgggtcatcaacggaacctaccaact
acctctgcttctgaagcaagcagcatccgccttcttatgcacgtcatcaactctgtgtta
atgagctgtaaatga
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integrated database retrieval system
