Juglans regia (English walnut): 109008924
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Entry
109008924 CDS
T05245
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109008924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109008924
Enzymes [BR:
jre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
109008924
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109008924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
AAA_22
CbiA
ATP_bind_1
SRPRB
AAA_24
ABC_tran
FtsK_SpoIIIE
DUF1611
AAA_29
Motif
Other DBs
NCBI-GeneID:
109008924
NCBI-ProteinID:
XP_018844755
UniProt:
A0A2I4GLH8
A0A833UN31
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All DBs
Position
10:complement(1568304..1573779)
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AA seq
442 aa
AA seq
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MAYSGAAMGAPGTAGSASASTVRQVKLERESELRVEVANDTPLRLRLLTGTAEIFGTELP
PEIWLNFPPRLKFAVFTWYGATIEMDGATELDYTADETPMVSYVNVHAILEGRRSRAKAS
SSNDYDSSQGPRVIVVGPTDSGKSTLSRMLLSWATKQGWKPTFVDLDNGQGSITCPGCIA
ATPIELPIDPVEGIPLDMPLVYFYGHTTPSNNVDLYKVLVKELARMLERQFTGNAESRAA
GMVINTMGWIEGVGYELLLHAIDIFNANVILVLGQEKLWSMLKDVLKNKPNVDVVKLQKS
GGVVSRNAKVRQKTRSYRIKEYFYGLVNDLSPHSNIANFSDLAVYRIGGGPQAPRSALPI
GAEPAADPTRLVPVSVNRDLLHVILAVSFAKEPDEIISSNVAGFIYITDVDIQRKKITYL
GPSAGDLPSKYLIVGTLTWLET
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggcttacagtggcgcagccatgggtgcgccaggaacggccggttcggcatctgcgtca
actgtcaggcaggtgaaattggagagagagagtgagctgagggttgaggtcgctaacgac
acgcctctcaggcttcgactgctcactggcacggctgagatcttcggcaccgagcttccc
ccggaaatctggctcaatttccctcccaggctaaaatttgccgtttttacttggtatgga
gcgacaattgaaatggatggtgctactgaacttgattatactgcagacgagacacccatg
gttagttatgtaaacgtccatgctatattggaaggacggagaagccgtgcaaaagcgtca
tcatctaatgactatgattcttctcagggaccccgggtgattgttgtgggacccacagat
tctgggaaaagtaccttatcaaggatgcttcttagttgggcaactaagcagggctggaaa
cctacttttgtggatttggataatggccagggatctataacgtgtcctggatgcattgca
gccaccccaatcgaactgcccattgacccagtggaaggaattcctcttgatatgcccctc
gtgtacttctatgggcacacaactcctagtaacaatgtagatttgtacaaagtactggtg
aaggagcttgctagaatgctggagagacagtttactggtaatgcagaatctcgagctgca
ggcatggtgatcaataccatgggatggatagaaggagtaggctatgagttgcttctacat
gcaattgatatattcaatgccaatgtcatcttggtcttgggtcaggaaaagctttggagc
atgctcaaagatgtcctaaagaacaagcctaatgtagatgttgtgaaacttcaaaagtct
ggcggggttgtatctaggaatgcaaaagttcgtcagaagaccaggagttataggataaag
gaatacttttatggtctagtgaatgatctctccccacattctaatatcgcaaattttagt
gatttggctgtatatcgaattgggggtggaccacaggccccacgatcagcactgccaatt
ggagcagagcctgctgcagacccgaccagattagttcctgttagcgtcaaccgggacttg
ctccatgtaattcttgctgtctcgtttgccaaagaacctgatgaaataatttcaagtaat
gttgctggctttatctatataactgatgtcgacattcaaaggaagaaaattacatacctt
ggaccgtctgccggagatctcccaagcaaatatttgatagtcggaaccttgacatggctt
gaaacttga
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