Juglans regia (English walnut): 109015989
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Entry
109015989 CDS
T05245
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
jre
Juglans regia (English walnut)
Pathway
jre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109015989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
109015989
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109015989
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109015989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
109015989
NCBI-ProteinID:
XP_018853999
UniProt:
A0A2I4HCW6
LinkDB
All DBs
Position
14:2820275..2858466
Genome browser
AA seq
2405 aa
AA seq
DB search
MLKFSSTVSSQIRFLLQSLNESNADAVLGELLQFVEYEIEGSIMLLQTCIDHLNFYSTDT
KNMLLDSVVASIFNYLLDKPNFSTVFFESLRDTEINEGTLENFSNALQLSVSEKIGFGLA
LLDSENLDTRMSGKNFCMSQIQELCADPALVNSSEQIQNIVVFLQRSDILSKHVDFFMQM
LSLVKSNDVTPFVLTPLLSDELREANFLRNVDVFHVSGEDDFDSILAEMEKEMSMGDIMK
ELGYGCTANASQCIEILSLFLPLTEITVAKILGTIARTQAGLEDNQNTFSTVSLALGCST
LSDLPSLSSWNIDVLIDSIKQLAPGTNWIRVIENMDHEGFYFPNQEAFSFFMSVYRRACQ
EPFPLHAICGSVWNNTEGQLSFLKYAVLAPPEVFTFAHSARQLAYIDAVHGNKLQLGHAN
HAWLCLDLLDVLCQLSESGHATSVRSMLENPIKHCPEVLLLGMAQINTAYNLLQYEVSLT
VFPIIVKNPMGNGMILHLWHVNPNLVLRGFVDSVNCDPDGMTRILDICQELKIISAVLDM
LPSYYAIRLAALASRKELVDLEKWLSYNLNTYKDIFFEECLNFLKEIQFRGSQNFSPKKF
HHSGAVLNLYVETSSTFVKVLKAHASSINSSLLAEEMEKLHATIMDSNPQLQNGGAATDS
SASDGYADDIEREANSYFHEMFSGQLTIDAMVQMLARFKESSVKREQLIFECMIANLFEE
YRFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTLAL
EQFVDRLIEWPQYCNHILQISHLRGTHSELVAFIEQALARISSGHSDTDGGSHASLVNHH
GSTQSASGNLELNGSSIIQPGQQLSAPLQLQQRHESLEDRHKATAAPSNDVKPLVSSIGQ
SSAVHLGIASMQKSQNAFSAPTLLSSSSGFVRPSRGVTSTRFGSALNIETLVAAAEKRET
PIEAPASEIQDKISFIINNISAANIEAKGKEFTEIFKEQYYPWFAQYMVMKRASIEPNFH
DLYLKFLDKINSKALSKEIIKASYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGR
NQVLRAREIDPKSLIMEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGLLAE
IYSMPNLKMNLKFDIEVLFKNLSVDMKDVAPTSLLKDRKREIEGNPDFSNKDAGASQPQL
VAEIKSGMISSANQVELPLEVASVSNSGGHSHFLSQYAASLHLPSGTLMDDEKLSALGLA
DQPPNAQGLVPATPSQSPFSISQLPAPIPNIGTHVIINQKLSALGLHLHFQRVVPIAMDR
AIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIFNAAHLMVASLAGSLAHVTCKE
PLRGSISSQLRNSLQGLSTASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIA
QQLTLRRKHREGVGPTYFEANMYTQGSMGVVPEALRPRPGHLSLSQQRVYEDFVRLPWQN
QSSQSSHAMPSGPASSGSTGLTNTYGSASGLLNLGSSAASGSTGFETLSRLQDESMESSS
ALHLSGSSIHIGVADGITQLSSENDSATASASELHSLDSSEVAKESGTASQPLPSPVATE
RLGSSISDPLLPTRDALDKYQIIAQKLEALLKNDGKEAEIQGVIAEVPEIILRCISRDEA
ALAVAQKVFKGLYENGSNNIHASAHLAVLTAIRDVCKLVVKELTSWVLYSDEERKFNKDV
TVGLIRRELLNLAEYNVHMAKLIDGGRNKAATEFSISLLQSLVIEESRVISELHNLVDAL
AKVAAKPGSPESLQQLIELVKNPAAGVVAVAGVNIGKEDKSRQLKDKKAPGQSTASREDY
NNAESLEPDPVGFGEQVSLLFAEWYRICELPGSNDAASAHFILQLHQNGLLKGDDMTDRF
FRLLTEISVAHCLSSEVINSATLQSTQQVQNISFFAVDMYAKLVFSILKGSSKLFLFSKI
LAVTVRFIQKNAEEKKESFNPRPYFRLFINWLLDLSSLDPVIDGANVQILAAFANAFHAL
QPLKVPAFSFAWLELVSHRSFMPKMLTVNGQKGWPYVQRLLVDLFQFMEPFLRNAELGMP
AHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPST
PNLKIDLLPDIGQSPRILSEVDAALKAKQMKADVDEYLKTRQPGSFLTELKQKLLHLPND
AAAAGTRYNVPLINSLVLYVGMQAIQQLQPKTPHSQSTSNTVPLAVFLVGAALDIFQALI
ADLDTEGRYLFLNAVANQLRYPNTHTHYFSFILLYLFAESNQEIIQEQITRVLLERLIVN
RPHPWGLLITFIELIKNPRYNFWNRTFIRCAPEIEKLFESVSRSCGGPKSVDESMVSGWA
SDNAH
NT seq
7218 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagttttcgtcaacggtgtcgagtcagattcggttcttgctccagagcctcaac
gaatccaacgccgacgccgttcttggcgagctccttcagtttgtagaatatgaaattgag
ggaagcattatgctgctccaaacatgcatcgatcatctgaacttttacagcacagacaca
aagaacatgctgctggattcagttgttgcgtcaatttttaattacttgttggacaaacca
aattttagcacagtgttttttgagtcgctaagggatacagagataaatgaaggaacccta
gagaatttctctaatgcactacagttgtctgtatctgaaaaaattggctttggccttgct
ttgttggattctgaaaatcttgataccaggatgtctggaaaaaatttttgtatgtctcag
attcaggaattgtgtgccgatccggctttggtgaattcttctgagcaaattcagaatatt
gtcgtgttccttcagcggtccgacatcctttccaagcatgtagatttctttatgcagatg
ttatcgttggtgaagtctaatgatgtcaccccatttgttttaactccattgctttcagat
gaattgcgcgaggccaactttctgaggaatgtggatgtgttccatgtatctggagaagat
gattttgattctattttagcagaaatggagaaagaaatgagcatgggagatattatgaag
gaactaggttatggatgcacagcaaacgcatcacaatgcatagaaattctctctcttttc
ttgccactgacagagattactgtggctaaaatacttggtacaattgcccgcacccaagct
ggtcttgaggacaatcagaacacattctcaacagttagcctggctctgggttgcagcact
ttgtctgatcttccatcattgagctcctggaatattgacgttcttatagattcaatcaag
caacttgctcctggtaccaattggatacgagttattgaaaatatggaccacgaggggttc
tactttcccaatcaggaggcattctctttttttatgtctgtatataggcgtgcatgccag
gagccattccctcttcatgccatttgtgggtctgtttggaataataccgagggtcagcta
tcttttcttaaatatgctgttttggcaccaccagaagtatttacgttcgcccattcagca
aggcagctggcctatattgatgcagtgcatggaaataagcttcagcttggacatgctaat
catgcatggttgtgtcttgatctcttggatgtactatgccaactatctgagagtggtcat
gccacttcagttcgatcaatgcttgaaaatcctattaaacactgtcccgaagtcttactt
cttgggatggcacaaattaatactgcttataacctcctccagtatgaagtgtcgctcact
gttttcccaattatagttaaaaatcccatgggtaatggaatgattcttcacctctggcat
gttaaccccaatttggtattgcgaggatttgtagattctgtaaactgcgatccagatggt
atgactagaatattggatatctgccaagagctaaagattatatcagcagtgttagatatg
ctgccttcttattatgccataagattggcagctcttgcttcacggaaagaactggtagac
cttgagaagtggctcagctataatttaaatacatataaagatattttcttcgaggagtgc
ctcaacttcttaaaggagattcagttccgtggatcacagaatttttccccgaaaaagttc
catcactctggtgctgtcttgaatctttatgtggagacaagttctacctttgtgaaggtc
cttaaagctcatgccagctcgattaactctagcttgcttgctgaggaaatggaaaagctg
catgcaacaattatggattctaatcctcaattgcagaatggtggggctgctacagattct
tcagcgtcagatggatatgcagatgatattgagagagaagcaaactcttacttccatgaa
atgttttctggtcagttgaccattgatgcaatggtccaaatgcttgctcgattcaaggaa
tcttctgtgaaaagggaacaattaatttttgagtgcatgattgcaaatctttttgaggag
tacagattctttcccaagtatcctgagagacagcttaaaattgctgcagttctgtttggc
tccgttatcaagcaccaacttgtgactcatctcaccttagggattgctctgcgtggtgtt
ttagatgcattacgcaaacctgccgactcaaaaatgtttgtgtttgggactctggctttg
gagcagtttgtggatcgtttgattgaatggccacagtattgcaatcatatattgcagata
tcccatctgcgtggtactcattcagaacttgttgctttcatcgagcaggctcttgccagg
atttcatctggccattcagacacagatggaggcagccatgcttctcttgttaatcaccat
ggttctacccagtctgcatcgggaaatttggagttaaatggctctagcatcatacagcct
gggcagcaactctcggccccactacagcttcaacagagacacgaaagtcttgaggatcgt
cataaagccactgctgcaccatctaatgatgtgaagcctctagtgtcttccatagggcaa
tcttcagccgttcatttaggcattgcttctatgcagaagtcacagaatgctttcagtgct
ccgacactgctttcttcttcatctggttttgttcgtccttctcgaggagttacttctacc
aggtttggctctgctctgaacattgaaacacttgttgctgcagctgagaaaagagaaact
cccatagaggctccagcatcagagattcaagacaaaatatcttttataataaataacatc
tcagctgctaatattgaagctaagggaaaagaattcactgaaatttttaaagagcagtac
tatccctggtttgcccaatatatggttatgaaaagggcaagcatcgagccaaattttcat
gacttgtatttgaagttcctggacaagattaactcgaaggctttgagtaaagagattatt
aaagcctcttatgagaactgcaaggttcttttaggatcagagcttataaagtcaagttcc
gaagaacgttcactgctaaaaaacctaggtagttggctggggaagctaacaattggaagg
aatcaagttttaagagctcgtgagatagatcctaaatctttgattatggaggcatatgag
aagggattgatgattgcagtaataccttttacttctaaggttctggaaccatgccaaagc
agcctagcgtatcaacctcccaatccttggaccatgggcattcttgggttacttgctgag
atatattcaatgccaaacttgaaaatgaaccttaagtttgacattgaggtcctattcaag
aacctaagtgttgatatgaaggatgttgcaccaacttctcttctcaaggatcgcaaaagg
gaaattgaagggaatcctgacttttctaacaaagatgctggggcatcccagccgcagtta
gttgctgaaatcaaatcaggaatgatatcttcagcgaatcaagttgagctaccgcttgag
gttgctagtgtgtctaattctggtggccactcacatttcttatctcagtatgctgcttct
cttcatctcccttctggtacattgatggacgatgaaaagctatcagctttaggattggcg
gatcagccccccaatgctcaaggactcgtcccagccactccatcccagtcacctttctcc
attagtcagcttcctgcaccaatacctaacattggaacacatgttattatcaaccagaag
ctcagtgctttaggcctacatctgcatttccagagagtggttcctattgcgatggataga
gctattaaagagatagtatctggtattgttcagcgcagtgtatctattgcaactcaaaca
acaaaggagcttgttttaaaggattatgccatggaatcggatgagacgcgcatatttaat
gcagcacacttgatggttgcaagtctggctggaagtttagctcatgtaacatgcaaggaa
cccttacgcggttcaatatcaagtcaactgaggaattcacttcagggtctgagcactgca
agtgaacttctagaacaagctgtacaacttgttaccaacgacaaccttgatcttggctgt
gcagtcattgaacaggctgctacggataaggcgatacaaaccatcgatggggaaattgct
caacaacttactttgagaaggaagcatagagagggtgttggtcccacatattttgaggca
aacatgtatacacaaggttctatgggtgttgtaccagaggccctccgccctagacctggt
cacttgtccctttctcaacagcgagtttatgaggactttgttcggcttccctggcaaaac
caatccagccagagttcacatgccatgccttctggtcctgcttcatctggaagtactggc
ctaactaatacatatggctcagcatctggattactaaatcttggcagcagtgctgcctca
ggaagcacaggattcgaaacactctctcggctacaggatgaatcgatggaatctagttcg
gctctgcatcttagtggttcctctattcacattggagttgcggatggaattacccaactt
agttctgaaaatgattctgccactgcttcagcctctgagttgcattcgctggattcctct
gaggttgcaaaagaatctgggactgcttcacagccattaccttcaccagttgccaccgag
cgccttggaagtagcatatcagatcctttgctccccactagggatgcattagataaatac
cagattattgcacagaagttggaagctttgctaaaaaatgatggtaaagaagcagaaatc
cagggagtcattgctgaagttcctgaaatcatactcagatgcataagtcgagatgaagct
gccctggctgttgcccagaaggttttcaaaggtttatacgagaatggatcgaataatatt
catgccagtgctcatcttgcagttctgactgctattcgtgatgtttgcaagcttgttgtg
aaggaactcactagctgggttctttactcagatgaggaacgtaagttcaacaaggatgta
actgttggccttattcgccgtgaattgctgaaccttgcagagtacaatgttcacatggca
aaacttattgatgggggaaggaataaagctgcgactgagttttcaatttcccttctgcaa
agtttagtcatcgaagaatctagagttatttctgaactacacaatcttgttgatgctctg
gcaaaggttgctgcaaagcctggatctcctgagtcattacaacagctgattgagcttgtt
aagaatcctgctgccggtgtggttgctgtagctggtgttaatattggaaaggaggataag
tccagacaattgaaagacaaaaaggctcctgggcaatctacagcgagcagggaagactat
aataatgcagagtctctagaaccagatcctgttggttttggtgagcaggtttctttgctg
tttgcggaatggtaccggatatgtgagctgcctgggtcaaatgatgcagcctctgcacat
ttcatcttacagttgcatcagaatggactactaaagggggatgatatgacagatcgcttt
ttccgccttctaacagagatttctgttgcgcattgtctttcttctgaggtgataaattca
gccacgttgcaatcaacccagcaagtgcaaaatatttccttctttgctgttgatatgtat
gcaaaactcgtattttcaattctgaagggttcaagcaaactctttcttttttctaagatt
ctggcagtgactgtgagattcatccagaaaaatgcagaggagaagaaagaatcttttaat
ccaagaccctattttagattgttcattaactggctgctggatctgagttccctggatcct
gttattgatggtgcaaacgttcagattttggcagcatttgcaaatgcatttcatgctctg
cagccccttaaagttcctgcattcagctttgcgtggctcgagttggtgagtcacaggagt
ttcatgccaaaaatgctcactgtaaatggtcagaagggttggccctacgtccagcgcttg
ctggtagacttgttccaattcatggagccatttttgaggaatgctgaacttggaatgccg
gctcattttctgtataaaggcacacttagggtactgttagtgctgcttcacgatttccct
gagttcctttgtgattaccactttaccttctgtgatgttattcctccgagctgcattcaa
atgcgaaatattatccttagtgcatttccccgtaatatgaggctgcccgatccatcaaca
ccgaatctaaagattgatttacttccggatattggtcaatccccacggattctctctgag
gttgatgcagctcttaaggcaaagcagatgaaggctgatgtagatgagtatctcaagact
aggcaacctgggtcctttctgaccgaactgaagcagaaactcctccacctaccaaatgat
gctgcagcagctggtacccgttacaatgttcccttgatcaactccctcgtgctctatgtt
ggaatgcaggccatccagcagttgcagccgaaaactcctcattctcagtccacatccaac
accgttccattggctgtgttcttggttggtgctgccttggacatcttccaggcactaata
gcggacttagataccgaagggcgctatctgtttctcaatgcagttgctaaccaattgcga
tatccaaatacccatacacattatttctccttcatccttctttacttgtttgcagaatca
aaccaggaaattatccaggagcaaattacaagagtgttgttagaacgcctgattgttaat
cgacctcatccatggggtcttctgattactttcatcgagttaattaagaaccctagatac
aacttttggaaccgaaccttcataaggtgtgctcccgagattgaaaagctttttgaatca
gtctcaagatcctgtggaggaccaaaatccgtggatgaaagtatggtttctggttgggcg
tccgacaacgcccactga
DBGET
integrated database retrieval system
