Kazachstania africana: KAFR_0J02600
Help
Entry
KAFR_0J02600 CDS
T02487
Symbol
KAFR0J02600
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
kaf
Kazachstania africana
Pathway
kaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KAFR_0J02600 (KAFR0J02600)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kaf03019
]
KAFR_0J02600 (KAFR0J02600)
Messenger RNA biogenesis [BR:
kaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
KAFR_0J02600 (KAFR0J02600)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
KAFR_0J02600 (KAFR0J02600)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_HEAT_N
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
13883973
NCBI-ProteinID:
XP_003959459
UniProt:
H2B124
LinkDB
All DBs
Position
10:complement(492375..498737)
Genome browser
AA seq
2120 aa
AA seq
DB search
MQESSSQSQIVFTLKEEKEAVQIILSQLNLLIINLSNENSVSTAKQIKFLLSKSSITVYV
KFWKKLILLCSSDIKNKTTRTAEKQPLIDLLFDLFSRLPDYSEDLLDILRKEIFCNREFG
TQSNLSLLDYIEFCNHNSAITETLDPTLPINRLKEIEKSKMNNSKYLETFLSQSSVDTME
TQLNDLFLSLSGESLNEMVALLLSEVLSPGSQKLQERSENSWFTPSSVIDATQRGQQISN
SLKRVYQDIVNWNRVFNLMSTKYFLTTPLKPTTASLSSFFASLKYGYLIDQFFGCDWNIT
FKLTLTIQLHDWSPQQTGCFDLLNVPDMKRVSEKIPNSKNSLLYLLSISTLDLELFLLRD
ELVNNPMLSYYQKCFFEDFNLVPEYLYLALINNMKHFTLLIENKNTINEIIITLLVQVFE
KSPVVLGELLNILPSKDKLLSDVGRAIIERKDAPVGNFIKLLHEQDKLDDFLNKLNFSES
FPILPAALKVGWVGFKQFMESNININTAPIIIDSLEAQTKMTDDNTTFRSSKTFDLESLH
FLITLLMNLPLSGNVLENFESLEYSIILSFPRIINYGNGHDKAILANGEFTPINSDVEKE
MQSYLQKMYSGDMAIKDVVDILRKLKDSDDPRDQDVFACITHAILGECTFFKDYPLEALA
TTSVLFGSMILFHLLNGFVLDVALRIIINFAKEGPDSKMFKFAIQALYAFRIRLSDFPGY
CKDFIEQVPGLQAQSQIYKFILDGSKAERRSPSSESDNQKNQKVELTNPRYFNVSEWQPP
VAQDIPPKETTEKVLFIVNNLTMDNFDKKRDDLKNFLKPSYYAWFSNYLVNQRAKTEPNY
HKLYSKILTSVNSRSLYECMVNTTLKQLFFFIAVKNTQSVDKKLLKNLASWLGSITLAID
KPIKYRNIAFRELLIDSYKENRLDIIVPFVCKVLMCASDSKIFKPPNPWTVGILKVLLEL
NEKANWKLSLTFEVEVLFKALNISMKELKPSNYIEVSDAVETLAGNLGTMSLEQQQIEHQ
RQVVLLQQHQQHMLMYQQRQQQQQRMLADQTSFAPDANITGAIATGTPGGLPSTINSNIS
AATVTATSSTNSNEVPFNNLSGTTVFATHPDLKRVFQMALAKSVREILIPTIEKSSGIAV
IATVKIITKDFATELDELKLKAAAVNMVRHLAQSFTRATTIDLLKETIRNTTQSLAPNLM
NSTSAPLEELDIAINDNVNLGLALIEKAAMDKAVQDIGEQLMQAVAVRRYHKERRSDQPF
LSPNANIHSLSLPEPLGLKTAGVTPQQFRIYEDFAKSGANTEGDNMSAQNQAHIMNQQGN
APNAPQSLVQQQQQHQQQQAIQPHISQPENMAQLQTQQPQAQGPIQQGGVTNAAPTELEQ
NHRILVHLMDILVAQIKENTDKQALIELGEQNELKNIIYQILTFIAKNPQKDQLALKVSQ
AVVNSLFATSESSLCREVLSLLLEKLCSLSIVARKDVVWWLVYALDSRKFDVAVIRSLLK
VNLIDAAELDNVLVTAMRNNMENAVTFAMNLLRDVVLSDKPILMRMDFIRTLEYLSILDD
DNVKQFLQEYNQVKILPISKNIAVTVNEKYSLVFTEWVKLLQKVDIEDSVVLIFIKQMMD
KGILSESDNMIKFMKCALELSVSSFKESDPTGEVFTAIDALGKLIIKLLIFQEFSDYYRG
DFLNTIYSTILLVFAEDHEQETFNERPYFRLLSNLFYEWSNIRGHKFSSIKDVKIRKELY
TFDIEFYNISATYLHSFQPFAFPGFSFAWVSLISHRMFLPQILRLPDKSGWEKLTLLIID
LFKFLDQYTKRGIVSDAISVVYKGTLRVILGISNDVPDFLIENHYELMNNLPATYFQLKN
VILSSIPKKKIVPNPYDPNLNMADVELCQQKPSIFYDPVKDLQSLKKPVDNYLRIPSNSL
LKAILNGLYRTEYDVKIGVGYDYLSIDNKLVRGVVLHVGIEAGLENERTSSSAVFNTKSS
YYTLLYNLINEGSTELRYQILQVMLEQLRYPNIHTYWFSYVLLNMFTSKEFGSNISEIQE
IMLRCLLERVIVNKPHTWGIIVFFTQLLQNKEVNILELDFIKNIPEIENILEQSVKHTSR
TATEDAVALAAEQKITSETT
NT seq
6363 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaatcgtcttctcaatctcaaatcgtttttacattaaaagaggagaaagaagct
gttcagatcatattatcacaactcaatctattaattatcaatttatcaaacgagaattct
gtctctactgccaaacagatcaaatttctcttaagcaagtcttcaattaccgtttacgtc
aagttttggaagaaacttatcttactttgttctagtgatattaagaacaaaactactcgc
acagctgaaaagcaaccactaatcgatttactctttgatcttttcagtcgtttacctgat
tatagcgaagatcttctcgatattttaagaaaagaaatattttgtaatagagaatttgga
acacaatcaaatttaagtcttctagattatatcgagttttgtaatcataactctgctatt
acggaaactctcgacccaacactccctataaatagactaaaagaaatcgaaaaatccaaa
atgaataactcaaaatatttagaaacatttctatcacaatcctctgtggatactatggaa
acgcaacttaatgacttattcttgtcattatctggtgaaagtctaaatgaaatggtagca
ttattactttctgaagtcttatctcccggttctcagaaattacaagagcgttcagaaaat
agttggttcactccatcatccgtcatagatgccactcagagaggtcaacaaatttctaat
tctttaaaaagggtttatcaggatattgtcaactggaatcgtgtatttaatttaatgtcc
accaaatatttcctgaccactccattaaaaccaactactgcttcattaagttcatttttt
gcatcattaaaatatggttatctaattgatcaattttttggctgtgattggaatataaca
tttaaattaactctaactattcaattgcatgattggtcaccacaacaaactggatgtttc
gatcttttaaatgtaccagatatgaaaagagtctctgagaaaattccaaattccaaaaat
tcattactttatctattgtctatttctacattagatcttgaactttttttattaagagat
gaattagttaataatccaatgttatcttactatcagaaatgtttctttgaagatttcaat
ttggttccagaatacttatatctagctttaatcaataatatgaaacatttcactttgtta
attgaaaataaaaatacaattaacgagattattatcactttgttggttcaagtgtttgaa
aaatcgcctgtagtgttaggtgaacttctaaacattttaccttcaaaagataagctatta
tcagatgtcggtagagccatcatagagagaaaagatgcgccagttggtaacttcatcaaa
ctattgcatgaacaagataaattagacgattttttgaacaagctcaatttctcagagtca
tttcccattttacccgctgcacttaaagttggatgggtaggtttcaaacagttcatggaa
tctaatataaatatcaatacagcaccaattattattgattccctagaagcacaaactaag
atgactgacgataataccacattccgttcttctaaaacttttgatttagaatctttgcat
ttcctcatcactctattgatgaatttacctctcagcgggaatgtattggagaactttgaa
tcattagaatattcaataatactttcttttccaaggattatcaattatggtaatggacac
gacaaagcaattcttgcaaatggtgaatttacaccaatcaactctgatgttgaaaaagaa
atgcaatcgtatctacaaaaaatgtacagtggggatatggccattaaagatgtcgttgac
attttgagaaagttaaaagatagtgatgacccaagagatcaagatgttttcgcttgtatc
actcatgcgattctcggtgaatgtacttttttcaaagattatccattggaagctctagcg
acaacatcggttctgtttggttccatgatacttttccacctattaaacggttttgtgtta
gatgttgcattacgaattataatcaatttcgctaaagaaggaccagactctaagatgttc
aaatttgctattcaggcgctgtacgcctttaggatccgtttatctgatttccctggttat
tgtaaggatttcattgaacaagttcctggtttacaagcccaatctcagatttataaattc
atcttagatggttctaaggctgagaggagatcaccatcttctgagagtgataatcaaaag
aatcaaaaagttgaattaaccaatcccagatactttaatgttagtgaatggcaaccccct
gttgcacaagatattccaccgaaggaaacaactgaaaaagtgttatttattgttaacaac
ttaaccatggacaattttgataaaaaaagagatgatttgaaaaactttttgaaaccaagt
tactatgcttggttttcaaattatttggttaaccagagagccaaaactgaacccaattat
cacaaattgtacagcaagattttaaccagtgttaactctcgctccttgtatgaatgcatg
gtcaatactactttaaaacaacttttctttttcatcgctgtgaagaatacacagtctgtt
gataagaagctccttaagaacctggcatcgtggcttggtagtattactctagctattgac
aaaccaatcaaatatagaaacatcgcatttagagaacttttgattgattcgtataaagaa
aacagattggacattattgtaccttttgtctgtaaagtattaatgtgtgccagtgactct
aaaatattcaaaccaccaaatccatggactgtgggtattctaaaagtactcttagagttg
aatgagaaggctaactggaaattaagtttaacttttgaagtagaagttttattcaaagca
ttgaatatatccatgaaggaattgaaaccttccaattatattgaggtttcagatgcagtg
gaaacattagctgggaaccttggtactatgtctttggagcaacaacagattgaacaccaa
agacaagtggtattacttcaacaacatcaacagcatatgttaatgtaccagcaaagacag
cagcagcaacaaagaatgcttgctgatcaaacttcattcgcaccagatgccaatattact
ggcgcaattgctaccggtacaccaggaggtttacctagcacgattaattccaatatttcg
gctgccacagttaccgcaacttcaagcacgaattccaatgaagttcctttcaataacttg
tcgggaacaactgtttttgctacacatccagacctaaaacgtgtcttccagatggcactg
gctaaatcagttagagaaattttaattccgacaattgaaaaatcttctggtattgctgta
attgccacagtaaaaatcattacaaaggattttgctaccgaacttgacgagctaaaatta
aaagcagcagctgttaatatggttagacatcttgctcaaagttttactcgtgcaacaacg
attgatcttttaaaggaaacaattcgtaatactacccagtcattagcccctaatttgatg
aactcgacatccgctccattggaggaacttgatattgctattaatgataatgtcaacttg
ggattagctttaatcgagaaagctgctatggataaagcagttcaagatattggtgaacaa
ctcatgcaagccgtcgcagtacgtagatatcataaggaaagaagatcggatcagccattc
ttaagtccaaatgcaaatattcactccttgtctttgcctgaaccacttggtcttaagaca
gctggtgtcacaccacaacaattcagaatatatgaggactttgccaagtcaggtgccaac
acagaaggagataatatgtcagctcaaaatcaggctcatattatgaatcagcagggcaat
gcaccaaatgctccacaatcattggttcaacagcaacagcagcaccagcaacagcaggcc
atccaaccacatatttctcagccagaaaacatggcgcaacttcagacacaacagccccaa
gcacaagggcctattcagcaaggtggagtcacaaatgctgccccaactgaactagagcag
aaccatcgtattttggttcatttgatggatattttggttgcacaaataaaggaaaatact
gataagcaggctttgattgaattgggtgaacagaatgaattgaaaaatatcatataccag
attttaacattcattgccaaaaatccgcaaaaggatcagttggccttaaaagtttcacag
gctgttgtcaacagtctttttgccactagcgaaagttcgttgtgtagagaagtcctttca
ctactattagaaaagctatgttcgctctctattgttgccagaaaagatgttgtatggtgg
ttggtttatgcattggatagcagaaaatttgacgttgctgtcataagatctttgcttaag
gttaatttgattgatgctgctgaactagataatgtcttggttacagctatgagaaataac
atggagaatgccgtcacatttgccatgaatttgttgagagatgttgtgctatcagataaa
ccaattttgatgagaatggactttatccgtaccttagagtacctaagcattttggatgac
gataatgtcaaacaattcttgcaggaatacaatcaagtaaaaattctaccaatttccaag
aacatcgccgtgactgtgaatgagaagtatagtctagtctttaccgagtgggtcaaacta
ttacaaaaagtggacatcgaggatagtgttgtcttaatatttatcaaacagatgatggac
aagggtattttatctgaaagtgataatatgattaaatttatgaaatgtgcattggaacta
tctgtttcatctttcaaagaaagcgacccaacaggagaagtttttactgcaattgatgct
ttaggaaaattgattataaaattacttatcttccaagaattttccgattactatagagga
gatttcttgaacactatctactctaccattttgctcgtttttgccgaagatcacgaacaa
gaaactttcaatgaaagaccatactttagattattatccaatttgttctatgaatggagt
aacattcgcggtcataaattcagtagtatcaaagatgtgaagataagaaaagaattgtat
actttcgacattgagttttacaatatttctgctacgtacttacattctttccaacctttt
gctttcccaggcttctcatttgcttgggtgtcgttgatatctcatagaatgttcctccca
caaattttgagattaccagacaaaagtggttgggaaaaactaacgttattgattattgat
ttatttaagtttttggaccaatacacaaagagaggaatagtatccgatgcaatttccgtt
gtttataagggtacattgcgtgttattttgggtatatcgaatgatgttcctgatttcttg
atagaaaatcactatgagctaatgaataacctaccagcaacatacttccagttgaagaat
gttattctgtcttcaattcctaagaaaaagattgtaccaaacccatacgatccaaatcta
aatatggcagatgtggaactgtgtcaacagaaaccatccatcttttatgaccctgtgaaa
gacctacaatcattaaagaaaccagtagataactacctacgtattccatcaaactccctc
ctaaaggccattttgaacgggctttatagaacagaatatgatgttaagataggtgttggt
tacgattatttaagcattgacaataagttagtacgcggtgttgtcctccatgtaggtatt
gaggcaggcttagaaaacgagagaacgtcatccagtgccgtattcaatactaagtcttca
tattacactctattatacaatttgataaacgaaggcagtactgagttgagatatcagatt
ctccaagtaatgttggaacaactaagatatccaaatatacacacatattggttttcttat
gttctgctaaatatgtttacttccaaagagttcggttctaatatttctgaaatccaggaa
attatgctaagatgtctattggaaagagtaatcgttaacaaaccacacacatggggtatc
attgttttcttcactcaactcttacaaaacaaggaagtgaacatactggaattggatttc
atcaagaacatcccagaaatagaaaatatcctcgagcaatccgtcaaacacacttctagg
acagctacagaagatgctgtcgctttggctgccgagcaaaagataacttcagagaccact
taa
DBGET
integrated database retrieval system
