Ketobacter alkanivorans: Kalk_05085
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Entry
Kalk_05085 CDS
T05294
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
kak
Ketobacter alkanivorans
Pathway
kak03410
Base excision repair
kak03430
Mismatch repair
kak03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
kak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Kalk_05085 (recJ)
03430 Mismatch repair
Kalk_05085 (recJ)
03440 Homologous recombination
Kalk_05085 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kak03400
]
Kalk_05085 (recJ)
DNA repair and recombination proteins [BR:
kak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Kalk_05085 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Kalk_05085 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Kalk_05085 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Glyco_transf_4
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
AUM11833
UniProt:
A0A2K9LHU1
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Position
complement(1201852..1203579)
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AA seq
575 aa
AA seq
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MKRITRRAPVNPPAFSPEVPSLLQRIYANRGLNRDDEVDLSLRHLLPASQLKGLDSALEL
LVVALEQGQRILVVGDFDADGATSSALSVLALRALGAASVDYLVPNRFEYGYGLTPEIVA
VAQQKHPDLIVTVDNGISSIEGVKAAREAGIKVLVTDHHLPAAELPQADAIVNPNQPGCP
FPSKNLAGVGVAFYLMTALRTRLKQLNWFQRQGLAEPNMADYLDIVALGTVADVVPLDRN
NRILVHHGLARMRAGRCRPGIKALVEVAKRRLPNLVATDLGFAVGPRLNAAGRLTDMSMG
IECLLVDDDRLATKYAAELEQLNHERKSIEGDMQQQALAALKQLHLGNEAELPWGLCIYK
KDWHQGVIGILASRIKERFHRPTIAFAPAEAGQVKGSARSIPGFHIRDALDAVASRHPGL
IVKFGGHAMAAGLSLRVEDLPRFEAAFDAEARRLLTRDDLTGELHSDGSLTEADIDLPVA
HLLRNAGPWGQGFPEPLFDGEFELLDQRIVGEKHLKLSIGLPSSKRVVDAIAFNVDLAKW
PNRNLSRIYLAYRLDVNEFRGVQNAQLMVEHLEPV
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaataacccgccgtgcccctgtcaatcctcctgcattctcccctgaagtcccc
agtttgctgcaacgtatttacgccaatcgtggattaaaccgtgatgacgaggtggatctt
tccctgcgacatttgcttccagccagtcagctgaaagggctggatagtgccttggagttg
ttggtggtggcactggagcagggccagcgcattttggtggtgggggattttgatgccgat
ggtgccaccagcagtgcactgtcggtactggctttgcgtgcgctgggggccgcctcggtg
gactatctggtgcctaatcgcttcgagtatggctatggtctgaccccggaaatcgtcgcg
gttgcgcagcagaaacatcccgatctgatcgtcactgtagacaatggcatatccagtatt
gaaggggtgaaagccgccagagaggccggtatcaaagttctggtaaccgatcatcacctg
ccggcggcggagctgccccaggcggatgccattgtgaatcccaatcagcccggttgtccg
tttccatccaagaacctggcgggggtcggcgttgctttctatctgatgacggccctgcgt
acccgcttgaagcagctcaactggttccagcgacaaggtctggcagaacctaatatggcc
gactatctggacattgtggcgctgggaaccgtggcggacgtggtgcccctggatcgtaac
aatcggattttggtgcatcatggtttggcccgtatgcgggctgggcgttgtcgacccggc
atcaaggctctggtggaggtggccaagcgccgtctgcccaacctggtggcaacagatctg
ggctttgcggtagggccacgcctgaacgcggctgggcggctcacagatatgtcgatgggt
atagagtgcctgttggtggatgatgaccgtcttgccacgaaatatgctgccgaattggag
cagcttaatcatgaacgtaaatccatcgaaggcgacatgcagcaacaggccttggctgcc
ctcaagcaactgcatctgggtaatgaggcggagctgccctggggcttatgcatttacaaa
aaggattggcatcaaggggtgatcggcatactggcatcccgaatcaaagaacgttttcat
cgacccaccattgcattcgcacctgctgaggcagggcaggtgaaaggctccgcccgttcc
ataccgggtttccatatccgcgatgcactggatgcggttgccagtcgccacccggggctg
atcgttaaattcggcggccatgctatggcggcggggctcagccttcgagtggaagatctg
cctcggtttgaagccgcgttcgatgcagaagcccgtcgtttgttgactcgtgatgatctg
accggcgagctgcacagcgacggctcgcttaccgaggcggatattgacctaccggttgct
catttactgcgcaatgctggcccctggggccagggcttccctgagccgctgttcgatggt
gagttcgagctgctggatcaacgtattgtgggcgaaaaacaccttaagctgtccattggc
ctgccttcaagcaagcgcgtagtggatgccatcgccttcaatgtggatctggcaaagtgg
cctaaccgcaatttatcccgcatctatctagcctaccgactggacgtgaacgagtttcgt
ggcgtgcagaatgcccagctgatggtggaacatctggagcctgtctaa
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