KEGG   Kluyvera ascorbata: KATP_41110
Entry
KATP_41110        CDS       T06881                                 
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
kas  Kluyvera ascorbata
Pathway
kas02024  Quorum sensing
kas03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:kas00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    KATP_41110 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    KATP_41110 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:kas03019]
    KATP_41110 (hfq)
   03036 Chromosome and associated proteins [BR:kas03036]
    KATP_41110 (hfq)
Messenger RNA biogenesis [BR:kas03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     KATP_41110 (hfq)
Chromosome and associated proteins [BR:kas03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    KATP_41110 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: BCA41589
LinkDB
Position
complement(4409272..4409577)
AA seq 101 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNAGGGTGSNYHHGSNAQGSAPQDSEETE
NT seq 306 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagatccgttcctgaacgcattgcgtcgggaacgtgtt
ccagtttctatttatttggtgaatggtattaagctgcaagggcaaattgagtctttcgat
cagttcgtgatcctgttgaaaaacacggtcagccagatggtctataagcacgcaatttct
accgtagttccgtctcgtccagtttcccatcacagcaataacgctggcggcggcactggc
agcaactaccaccacggtagcaacgcgcagggttctgcgccgcaagacagcgaagaaacc
gaataa

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