Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonas culicis): CKBE_00427
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Entry
CKBE_00427 CDS
T02427
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
kbl
Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonas culicis)
Pathway
kbl03410
Base excision repair
kbl03430
Mismatch repair
kbl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
kbl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CKBE_00427 (recJ)
03430 Mismatch repair
CKBE_00427 (recJ)
03440 Homologous recombination
CKBE_00427 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kbl03400
]
CKBE_00427 (recJ)
DNA repair and recombination proteins [BR:
kbl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CKBE_00427 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CKBE_00427 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CKBE_00427 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AFZ83616
LinkDB
All DBs
Position
complement(469247..470956)
Genome browser
AA seq
569 aa
AA seq
DB search
MAILPRVTIRPVEKKLSNMLEKFGIHPLLAKLLASRGIKDINQVQYEWISLIPPNYLNQA
NKAARHLADAITKSEKILIVADYDCDGATACAVGIRALRAMGANVDFIVPNRFKNGYGLS
IDIVEQILSNKLSKPDIILTVDNGISSIDGIEYANKNNIQVIVTDHHLPGIKLPNALSIV
NPNHPNCNFPSKNLSGVGVIFYLMIELRAEMRRRKIYRNNTGPKLNELVDLVALGTIADM
VKLDANNRLLVTQGLNRIRNGCAQPGIKALFKVANKQTNNADSSSLGFYIAPRLNAAGRL
YDMSLGILCLITDNYDEALKISTELDNINKCRRCIENKMNEEALSDIADYEFEGKNTICI
YNEKWHTGIVGLVASKLKERFWKPTIVFADSENNEIRGSARSVMDLNIKDILDIIAKNHP
NIIKQFGGHAMAAGLTINSNNYFEFTEIFENVVKTITSNSKITPTIETDGSLKTEYINLD
ISRLLKKQVWGSGFPSPIFIDSFKVISQKTIKDTHKKLILMREKMKFDAIWFNHTEYLPE
NIKATYRIDENIWDGKSNLQLLLEHIYTI
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggcaatactacctagggtaacaataagacctgtagaaaaaaaattatctaacatgcta
gaaaaatttgggatacaccctcttttagcaaaattattggcatcaagaggaattaaagac
ataaaccaagtccagtatgaatggatatcactaataccaccaaactatttaaatcaagca
aataaagctgcaagacatttagctgatgctataacaaaaagtgaaaaaatactgatagta
gcagattatgattgtgacggggcaacagcatgcgctgtaggaataagggcgctgagagca
atgggggcaaatgttgatttcatagttcctaatcgatttaaaaatggttatggactgtca
atagatattgtagaacaaatattatcaaataagctatctaagcctgacataattctcaca
gtagataatgggatatcaagtattgatggaatagaatatgctaataaaaataacatccag
gtcattgttacagatcaccatctacctggaataaaacttcctaatgcattgtcgattgta
aaccctaatcaccctaactgtaacttcccatctaaaaatttatcaggtgtaggcgtaata
ttttatctaatgatagaacttagagcggaaatgcgtaggcgtaaaatatatagaaataat
acaggccccaaactaaatgaattagtagatctggtagcattaggaactattgcggacatg
gttaaactagatgctaataaccgtttgctagttacacagggtttaaatagaataaggaat
ggttgcgctcagccaggaataaaagcattatttaaagtagcaaataaacaaacaaataat
gctgatagctctagcttaggattctatatagctccacgtttaaatgcagcaggacgttta
tatgatatgagcctgggtatattatgcttaataacagacaattatgatgaagcactaaaa
atatcaacagaactagataatattaataaatgccgtagatgcatagaaaataagatgaat
gaagaagcattatcagatatagctgattatgaatttgaaggaaaaaataccatatgtatt
tataatgaaaaatggcatactggaatagttggattagttgcctcaaaattaaaagaaaga
ttttggaagccaacaatagtatttgcagattctgaaaacaatgaaataagaggatcggca
aggtccgtaatggatttaaatataaaagatatattggatataattgctaaaaatcacccc
aatataataaaacaatttggcggacatgcaatggctgcaggactaacaataaacagtaat
aactattttgaatttactgaaatatttgaaaacgtcgttaaaacaataaccagcaacagt
aaaataaccccaacaattgaaactgatggctctcttaagactgaatatataaatttagat
atatctcgtttattaaaaaaacaagtatggggatcgggatttccttctcctatatttatt
gatagctttaaagttatatcacaaaaaaccattaaagatactcataaaaagctcatattg
atgagagaaaaaatgaaatttgatgccatttggtttaatcatacggaatatttaccagaa
aatataaaagcaacatatagaatcgatgaaaacatatgggatggtaaaagtaatttacaa
ctattgcttgagcatatatatactatataa
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