Phytobacter ursingii: AB182_28500
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Entry
AB182_28500 CDS
T03950
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
kin
Phytobacter ursingii
Pathway
kin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB182_28500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kin03019
]
AB182_28500
03016 Transfer RNA biogenesis [BR:
kin03016
]
AB182_28500
Enzymes [BR:
kin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AB182_28500
Messenger RNA biogenesis [BR:
kin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AB182_28500
Transfer RNA biogenesis [BR:
kin03016
]
Prokaryotic type
tRNA degradation factors
AB182_28500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_2
KH_2
aRib
DUF4172
SLS1_KH2
Motif
Other DBs
NCBI-ProteinID:
AKL14976
LinkDB
All DBs
Position
5273525..5275660
Genome browser
AA seq
711 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGAKKAKPGQDFFPLT
VNYQERTYAAGKIPGGFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVSMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQEELKTSKLDLVVA
GTEGAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNE
ALNARVAALAEARLSDAYRITDKQERYAQVDVIKSDVVAALVAEDETLDANELGDILHAI
EKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQIIDELMGERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPEMEK
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNFVVLSD
ILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILSVMEQA
INAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGDKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQTQPEAAPEAPQAEQGE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
ttgcttaatccgatcgttcgtaaattccagtacggccaacacaccgtgacactggaaacc
ggcatgatggcgcgtcaggcgacagccgctgttatggttagcatggatgacactgcggta
ttcgttaccgttgtgggtgctaaaaaagctaaaccgggccaggatttcttccctttaacg
gttaactatcaagagcgtacctacgctgcgggtaaaattccgggtggcttcttccgtcgc
gaaggccgtccaagcgaaggcgaaaccctgattgcgcgtctgattgaccgcccggttcgt
ccgctgttcccggaaggttttgttaacgaagttcaggttattgcaaccgtggtttccgtt
aacccgcaggttaaccctgatatcgtttctatgattggtgcttccgcggcactgtctctg
tcaggtattccgtttaatggcccgattggcgcagcgcgcgtgggttacattaacgatcaa
tacgtactgaacccgacccaggaagaactgaaaaccagcaagctggacctggttgttgcg
ggtaccgaaggtgcggtactgatggttgaatccgaagctgaattgctgagcgaagaccag
atgctgggcgcagttgtatttggccacgaacagcagcaggttgttatccaggccatcaat
gatctggtaaaagaagcgggcaaaccgcgttgggactggcagccggaagccgtcaacgaa
gcgctgaacgcgcgcgttgctgctctggcagaagcgcgtctgagcgatgcttaccgcatc
actgacaaacaagagcgttatgctcaggttgatgtcattaaatctgatgttgttgctgcg
ctggttgcagaagatgaaacgctggatgctaacgagctgggcgacatcctgcacgctatc
gagaaaaatgttgttcgtagccgcgtcctggctggcgaaccgcgtatcgatggtcgcgaa
aaagacatgatccgtggtctggatgtacgtactggcgtactgccgcgtactcacggttcc
gcgctgtttacccgtggtgaaactcaggctctggtgactgcaacgctgggcactgcccgc
gatgcgcagatcattgatgaactgatgggtgagcgtactgataccttcctgttccactat
aacttccctccgtattctgtaggggaaaccggtatggtcggctcgccgaaacgtcgtgaa
atcggtcacggtcgtctggcgaaacgcggcgtgctggctgttatgcctgaaatggaaaaa
ttcccgtataccgttcgcgtggtatctgaaatcaccgaatccaacggttcttcttccatg
gcttccgtgtgcggtgcctctctggcactgatggacgctggcgtgccaatcaaagcggcc
gttgcgggtatcgcgatgggcctggtgaaagaaggcgacaacttcgttgttctttctgac
atcctgggcgatgaagatcacttaggcgatatggacttcaaagtagcgggttcccgcgac
ggtatctctgcactgcagatggatatcaaaattgaaggcatcaccaaagagatcatgcag
gttgcgctgaaccaggctaaaggtgctcgtctgcacatcctgagcgtgatggaacaggcg
atcaacgcgccgcgtggcgacatttctgaattcgcaccgcgtatccacaccatcaagatc
aacccggacaaaatcaaagacgtcatcggtaaaggtggctctgttatccgtgcgctgacc
gaagagaccggcaccaccatcgaaatcgaagatgacggtaccgttaaaatcgcagcaacc
gacggcgataaagcgaaacatgctatccgtcgcatcgaagagatcactgcggaaatcgaa
gtcggccgtatctacaacggtaaagtgacccgtatcgttgactttggcgcattcgttgcc
attggcggcggtaaagaaggtctggttcacatctctcagattgctgacaagcgcgttgag
aaagtgaccgactacctgcagatgggccaggaagtaccggtgaaagttctggaagttgat
cgccagggccgtatccgtctgagcattaaagaagccactgaacaaactcagcctgaagcc
gcgccggaagcgccgcaagcagagcagggcgagtaa
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