Kaustia mangrovi: HW532_00405
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Entry
HW532_00405 CDS
T07196
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
kmn
Kaustia mangrovi
Pathway
kmn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
kmn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HW532_00405 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
kmn03021
]
HW532_00405 (rpoB)
03400 DNA repair and recombination proteins [BR:
kmn03400
]
HW532_00405 (rpoB)
Enzymes [BR:
kmn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HW532_00405 (rpoB)
Transcription machinery [BR:
kmn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HW532_00405 (rpoB)
DNA repair and recombination proteins [BR:
kmn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HW532_00405 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF7726
Motif
Other DBs
NCBI-ProteinID:
QPC41333
UniProt:
A0A7S8C0V3
LinkDB
All DBs
Position
67589..71677
Genome browser
AA seq
1362 aa
AA seq
DB search
MSQTFTGRKRVRKFFGHIKEVAEMPNLIEVQKESYRQFLQVKEPDGGRDELGLQAVFKSV
FPITDFSGQAMLEFVRYEFEDPKYDTDECQQRGMTFAAPLKVTLRLIVFEVDEDTGSKSV
KDIKEQDVYMGDMPFMTGHGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA
RIIPYRGSWLDFEFDAKDIVHVRIDRRRKLPVTTLFYALGLDGEEILHYFYDTVTYTRSD
DDWRTPFDTEHYRGVKPERDLIDAKTGEVAVEAGRKITPRLARKLSEEGLKELLVRDEDL
FGRFIADEMVNPETGEIYAEAGDELTGELLTTLREAGYEELRVLDIDNVTVGPYIRNTLK
ADKVDSYEQALLEIYRVMRPGEPPTRETAEALFEGLFSDPERYDLSSVGRVKLNMRLDLE
CPDTVRTLRREDILAVVKMLNDLRDGKGEIDDIDHLGNRRVRSVGELMENQFRVGLVRME
RAIKERMSSVDIDTVMPHDLINAKPVAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATYARVNKYGFIESPYR
KVIDGNVSGEVSYLSAIEEAKYHIAQANVELSDKGEFLDELVTCRFAGDVTMVTPDRVEY
VDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPLVGTGMEAVVARDS
GAAISARRSGVVDQVDARRIVIRATDETDPTKSGVDIYTLFKFQRSNQDTCINQRPLVRM
GDRVEAGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNFEDSILISERVVRDDVFTSIHL
EEFEVMARDTKLGPEEITRDIPNVGEETLKNLDEAGIVYIGAEVNPGDILVGKITPKGES
PMTPEEKLLRAIFGEKASDVRDTSLRVPPGVSGTIVEVRVFNRHGIDKDERALAIEREEI
ERLAKDRDDEMAILDRNSYSRLADFLAGKEAAGGPKGFKVEGKITQAMLDEMPRSRWWEI
ALSNEKALSELEAMRQQYEESKQRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKL
QPGDKMAGRHGNKGVISKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWA
CAGLGRQIGELVDNYRESGDTTELKSKLHAVYGADETVASLDDNELVEMAQNLRNGVPMA
TPVFDGAKEEDIAEMLSQAGFASSGQSVLYDGRTGEPFDRQVTVGYIYMLKLHHLVDDKI
HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK
VYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELTDTQET
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagacgttcaccgggcgcaagcgggttcgcaagtttttcggtcatatcaaggaa
gtggcggagatgccgaacctcatcgaggttcagaaggagtcctaccgccagttcctgcag
gtgaaggagcctgacggaggccgtgacgagcttggcctccaggcggtgttcaagtcggtg
ttcccgatcaccgatttctccggccaggccatgctcgaattcgtccgctacgaattcgag
gatcccaaatacgacaccgatgagtgccaacagcgcggcatgacgtttgccgcgccgctg
aaggtcacgctgcgcctcatcgtgttcgaggtcgacgaggatacggggtcgaaatcggtc
aaggacatcaaggagcaggatgtctatatgggcgacatgcccttcatgaccgggcacggc
accttcatcgtgaacggcacggagcgcgtgatcgtctcacagatgcaccgctcgccgggc
gtgttcttcgaccacgacaagggcaagacgcattcctccggcaagctgctcttcgccgcg
cgcatcatcccctatcgcggctcctggctcgacttcgagttcgacgccaaggacatcgtg
catgtcaggatcgaccggcgccgcaagctgccggtgacgacgctgttctacgcgctgggc
ctcgatggcgaggagatcctgcactacttctacgacacagtgacctacacccggtccgac
gacgattggcgcacgcccttcgacaccgagcactatcgcggtgtgaagccggagcgcgac
ctgatcgacgccaagaccggcgaggtcgccgtggaggccggccgcaagatcacgccgcgc
cttgcgcgcaagctgtcggaggaggggctcaaggagctcctggtccgcgacgaggatctg
ttcggccgcttcatcgccgacgagatggtcaatcccgagaccggcgagatctatgcggag
gccggcgacgagctcaccggggagctgctgaccacgctgcgcgaggcgggctacgaggag
ctcagggtcctcgacatcgacaatgtcacggtcggcccctatatccgcaacacgctgaag
gccgacaaggtcgacagctacgagcaggcgctcctggagatctaccgcgtcatgcgtccg
ggcgagccaccgacccgcgagaccgcggaggcgctgttcgagggcctgttctccgatccg
gagcgttacgacctgtcctcggtcggccgcgtgaagctcaatatgcggctcgatctcgaa
tgccccgacacggtgcgcacgctgcgccgcgaggacattctggcggtcgtgaagatgctc
aacgacctgcgcgacggcaagggcgagatcgacgatatcgaccatcttggcaaccgccgg
gtgcgctcggtcggcgagctcatggagaatcagttccgcgtcggcctggtgcgcatggag
cgtgcgatcaaggagcgcatgtcgtcggtcgatatcgacacggtcatgccgcacgacctg
atcaacgccaagcccgtggccgcggcggttcgcgagttcttcggctcctcgcagctctcc
cagttcatggaccagacgaacccgctgtcggaggtgacccacaagcggcgcctgtcggcg
ctcggcccgggcggcctcacgcgggaacgggcgggcttcgaggtgcgcgacgtgcatccg
acccattacggccggatctgcccgatcgagacgccggagggcccgaatatcggcctcatc
aactcgctggccacctatgcgcgggtcaacaagtacggcttcatcgagtcgccctaccgc
aaggtgatcgacggcaatgtgtcgggcgaggtctcctatctctccgcgatcgaggaggcg
aagtaccacatcgcccaggcgaatgtggagctgtccgacaagggcgagttcctcgacgag
ctcgtgacctgccgttttgccggcgacgtgaccatggtgacgccggaccgcgtcgaatat
gtcgacgtctcgccgaagcagctcgtgtcggtcgcggccgcgctcatcccgttcctcgag
aacgacgacgccaaccgcgcgttgatgggctcgaacatgcagcgtcaggccgtgccgctg
gtgcgcgccgaggcgccgctcgtcgggaccggcatggaggcggtcgtggcgcgcgattcc
ggtgccgcgatctccgcgcgccggtcgggcgtggtcgaccaggtcgacgcccgccgcatc
gtcatccgggcgacggacgagaccgatccgaccaagtcgggcgtggacatctacacgctg
ttcaagttccagcgctccaaccaggacacctgcatcaaccagcgtccgctggtgcgcatg
ggcgaccgggtggaggcgggcgacatcatcgccgacggtccgtcgaccgatctcggcgac
ctggcgctcggccgcaacgtgctcgtcgcgttcatgccctggaacggctacaacttcgag
gactccatcctcatctccgagcgcgtggtgcgtgacgacgtcttcacctccatccatctg
gaggagttcgaggtgatggcccgcgacaccaagctcgggccggaggagatcacgcgcgac
atcccgaatgtcggcgaggagacgctgaagaacctcgacgaggcaggcatcgtctatatc
ggtgcggaggtcaatccgggcgacatcctggtcggcaagatcacgccgaagggcgagagc
ccgatgacgccggaggagaagctcctgcgggcgatcttcggcgagaaggcctcggatgtg
cgcgacacctcgctgagggtgccgccgggcgtgtcgggcacgatcgtcgaggtccgggtg
ttcaatcgccacggcatcgacaaggacgagcgtgcgctcgccatcgaacgcgaggagatc
gagcggctcgccaaggaccgcgacgacgagatggcgatcctcgaccgtaactcctacagc
cggctggccgatttcctcgccggcaaggaggctgcgggcggcccgaagggcttcaaggtg
gaaggcaagatcacccaggcgatgctcgacgagatgccgcgctcgcgctggtgggagatc
gcgctgtccaacgagaaggccctgtcggaactggaggccatgcgccagcagtacgaggag
tccaagcagcgtctcgagcagcgcttcctcgacaaggtggagaagctgcagcgcggcgac
gagctgccgcccggcgtgatgaagatggtcaaggtgttcgtcgcggtgaagcgcaagctg
cagccgggcgacaagatggccggccgtcacggcaacaagggcgtcatctccaagatcgtg
ccgatcgaggacatgccgttcctggaggacggcacccatgccgacatcgtgctgaacccg
ctcggcgtgccgagccgcatgaatgtcgggcagatcctcgaaacccatctgggatgggcg
tgtgcgggccttggccggcagatcggtgagctcgtggacaattaccgcgagagcggcgac
acgaccgagctcaagagcaagctccacgccgtctacggggccgacgagacggtggcctcg
ctcgacgacaacgagctcgtggagatggcgcagaacctgcgcaacggcgttcccatggcg
accccggtcttcgacggcgccaaggaggaagacattgcggagatgctgtcccaggcaggc
tttgcctcctccgggcagtcggtactctacgatgggcgcacgggcgagccgttcgaccgg
caggtgacagtcggctatatttacatgctgaagctgcaccatctggtcgacgacaagatc
catgcccggtccatcggcccctacagcctggtcacccagcagccgctcggcggcaaggcc
cagttcggcggccagcgcttcggcgagatggaggtgtgggcgctggaggcttatggcgcg
gcctacacgcttcaggagatgctcaccgtcaagtcggacgacgtggccggccgcacgaag
gtctacgaggcgatcgtgcgcggcgacgacaccttcgaggcgggtattccggagagcttc
aacgtgctcgtcaaggagatgcgctcgctcggcctcaatgtcgagctgaccgacacccag
gagacgtga
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