Kryptolebias marmoratus (mangrove rivulus): 108234454
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Entry
108234454 CDS
T05608
Symbol
thoc5
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03013
Nucleocytoplasmic transport
kmr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108234454 (thoc5)
09122 Translation
03013 Nucleocytoplasmic transport
108234454 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kmr03019
]
108234454 (thoc5)
03041 Spliceosome [BR:
kmr03041
]
108234454 (thoc5)
Messenger RNA biogenesis [BR:
kmr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
108234454 (thoc5)
Spliceosome [BR:
kmr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108234454 (thoc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
108234454
NCBI-ProteinID:
XP_017269150
UniProt:
A0A3Q3B3T3
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All DBs
Position
LG1:complement(17774431..17782253)
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AA seq
684 aa
AA seq
DB search
MSSDALKKRKSKVLRTEGGTPEVKRGRGDADPQDVRVYNEEVELDSKDPAQDYAQYKESC
ESLAKLMSEIQELKASGAKEGSTEVEQKRMQSCILFMNLKKLNRLAHMRLKRGRDQTHEA
KQKVDVLHLQLQNLLYEVMHLQKEISKCLEFKSKHEEINLVSEEEFYQDAPTEISRPQHT
KNDPHQLTLARLDWELEQRKRLAEKYKDSQATKEKIQKSIEVKKEHLRSLQPGLNAIMQA
SLPVQEYLSMPFEQTQKQAEVARHLPPPLYVLFVQANAYSQACDKNLSVSINGDVDEAKA
LSKPPDDSQDDESDSDAEEEQEKTKRRRPTTGGQLDDKRREMIKRHPLSLCVDLKCKDGS
TLHLFFYYLMNLNIMTVKTKVSTSTDLSMAISAGELLKSDTLLSCLYSSDQGRETPNPAN
RYQFDKVGIVSFADYVEDLGYPYMWVQNLGGLHFPGETSEGMLVGSSLSASHMESTMKLL
RGRVQSRLALHKQFASLEHSIVPISSECQNLFPAKIISRLTRWTTISHQEFMDLPYTRHV
TDAGLSKETDLYFMGVIERGTARLHAAVVLSPRYPEISPLFSVSLNWKGECSGRTDDNLR
AIESEVNVFKNELQGPRPGHQLLTNQIARLCVCLDVYLETEGQDDSVEGPREFPREKMCL
RTVRGPNRLKPFKYNHPQGFFSHR
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccgacgctctaaagaagcggaaatcgaaggtcctccgcactgaaggaggaacc
ccggaggtgaagagaggtcgcggagatgcggacccacaggatgttcgtgtctacaacgag
gaggtggagctggacagcaaagaccctgcgcaggattacgctcagtacaaagaatcgtgt
gagagtttggccaaactcatgagtgagatccaggagctgaaagccagtggagccaaggag
gggagcacggaggtcgagcaaaaacgtatgcagagctgcatcctcttcatgaatctgaaa
aaactcaaccgtttggctcatatgcgactgaagagaggcagagaccaaacacatgaggcg
aaacagaaagttgacgtgcttcaccttcagctgcaaaacctgctctatgaagttatgcat
cttcagaaggagatcagcaaatgtctggagttcaagtccaaacatgaggaaattaacttg
gtgagtgaagaagagttttaccaggacgccccgacggaaatctccaggcctcagcacaca
aaaaacgatccccaccagctcacgttggcacggctggactgggagcttgaacagaggaaa
aggctggcagagaaatacaaggactcccaggccacaaaggagaaaattcagaagagcatt
gaagtgaagaaggagcatctgaggagcttgcaaccaggtcttaatgctattatgcaggcg
tctctcccagtgcaggagtatctgtccatgccgtttgaacagacccagaaacaggccgag
gtcgcccgccacctgcctccacctctttatgtgctgtttgttcaagcaaacgcttacagc
caagcctgcgacaagaacctgagtgtgtcaatcaatggggatgtagatgaggccaaagca
ctgtccaaacctcccgatgattctcaggatgatgagagtgactcagatgcagaagaagaa
caagagaaaaccaagagaaggcgaccgaccacaggcggccagctggatgataaaagacga
gagatgataaaaaggcaccccctgtccctgtgcgtggaccttaagtgtaaagacggcagc
actcttcatctgttcttctactacctgatgaatctgaacattatgacggtcaagaccaaa
gtctccacctccactgacctcagcatggccatcagcgctggagagcttcttaaatcagac
actctccttagctgtctctacagcagcgaccagggaagagaaacgcccaatccagccaat
cgctaccagtttgataaagttgggattgtttcctttgctgattatgtggaggacctggga
tatccctatatgtgggttcagaatctcggaggactccattttcctggtgaaacttcggag
ggcatgcttgtgggaagttctctgagtgccagccacatggagagcaccatgaagctgctg
aggggacgagtccagtcccgcttggctctgcacaaacagtttgcctccttagaacacagc
atcgttcccatctccagtgagtgccagaacctctttcctgccaagatcatctcccgttta
acgcgttggaccaccatcagtcaccaggagttcatggatctgccttacacccgtcatgta
actgatgccggcctgtccaaggagacagatctgtactttatgggagtcatagaacgaggc
accgctcgtcttcatgctgctgtggttctgagtccccgttacccagagatctctcctctg
ttctctgtgtcactgaactggaagggagagtgcagcggacgcactgacgacaaccttcgc
gccatagagagtgaggtgaatgtgtttaaaaatgagctacaggggccgcggccggggcac
cagcttctgaccaatcagattgctcgcctgtgcgtctgcctggacgtgtatttggagacg
gaaggacaagatgacagcgtggaaggacctcgcgagtttcctcgtgaaaagatgtgcctg
cgcactgtcaggggtccaaatcgtctgaagccgttcaagtacaaccaccctcagggtttc
ttcagccaccgttaa
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integrated database retrieval system
