KEGG   Kryptolebias marmoratus (mangrove rivulus): 108241599
Entry
108241599         CDS       T05608                                 
Symbol
tdp1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
kmr  Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:kmr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    108241599 (tdp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:kmr03400]
    108241599 (tdp1)
DNA repair and recombination proteins [BR:kmr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     108241599 (tdp1)
SSDB
Motif
Pfam: Tyr-DNA_phospho
Other DBs
NCBI-GeneID: 108241599
NCBI-ProteinID: XP_017281366
LinkDB
Position
LG15:complement(18468020..18476852)
AA seq 614 aa
MSQDSQHGKWTISSSDDDDNKEDLPPSGTTASDSRQTAEPSRGSRRSASPVPVKAEPART
PEYSLSIGSEARQSAARNQLNPVKRETSPSLAGKRKKEVSDGTGWALSDSDEDDGDVKKN
SGGNLPKRALPNAEKKKPKVESERPPSPHGRLYYLDEPEDFFESCTPPLNDTYRFYLNKV
TGLNRKYNSGALHIRDILSPLFGTLKESVQFNYCFDIPWMVKQYPSEFRDCPVLIVHGDK
REAKARLLQQAQPFPHVRFCQAKLDIAFGTHHTKMMLLWYEEGFRVIILTSNLIRADWYQ
KTQGMWMSPLFPRLPEGSSPSAGESPTFFKQDLLDYLASYRAPELEEWIRRIGEHDLSET
RVYLVASTPGRFVGSDMERWGLLRLRKLLHEHTNPIPGEEKWPVVGQFSSIGSMGADKTK
WLVGEFQRTLTTLGKSSLRSDPPMHLLYPSVDDVRLSLEGYPAGGSLPYSVQTAQKQLWL
HSYFHRWKANCTGRSHAMPHIKTYMRVSPDFTQLAWFLVTSANLSKAAWGALEKNNTQMM
VRSYELGVLFVPSAFNMKTFPVDKNPFPVSSSTSGFPVPFDLPPSSYSPKDQPWIWNIPY
SQEPDTHGNIWVPS
NT seq 1845 nt   +upstreamnt  +downstreamnt
atgtctcaggacagtcagcatggcaagtggaccatctccagcagtgatgatgacgacaac
aaagaggatcttcctccttctgggactacagcatctgactcccgtcagacagctgaaccc
agtcgcggctctcgcaggtctgcctctccggtgccggtgaaagcagaaccagccagaact
ccagagtactcactctccatcggctctgaggccagacagtcagctgcgaggaaccagctg
aacccagtcaagcgtgaaaccagcccttcgctggctgggaagaggaagaaagaggtgtca
gacggcacaggctgggctctctcagacagcgatgaagatgatggagacgtgaaaaagaac
agcgggggtaatctgccaaagcgggctcttccaaatgcggagaaaaaaaagccaaaggtg
gagagtgagcgtcctccgagtcctcacggccggctgtactatctggatgagccagaggac
ttcttcgagtcgtgtactcctcctctgaatgacacctacaggttctacctcaacaaagtc
acaggactgaacaggaagtacaacagtggagcgctgcacatcagagacattctctcccca
ttgttcggcactttgaaagagtctgttcagtttaactactgttttgatattccttggatg
gttaagcagtacccatcagagttcagggattgtccggttcttatcgttcatggagataaa
agggaggccaaagcacgactgctgcaacaagctcagccctttccacacgtccgcttctgc
caggccaagctggacattgcttttggaactcaccacacgaagatgatgctgctgtggtac
gaggaaggtttcagggtcatcattctcacctccaacctcatcagagccgactggtaccag
aagacacaagggatgtggatgagccctctgtttccacggttaccagaggggagcagtccg
agcgccggtgagtcgcccaccttctttaagcaggacctgctggactacctggcgtcgtat
cgcgcgccggaactggaagagtggatccgacgaatcggagagcatgacctgtccgagacc
agagtttatttggtcgcctcgactccagggaggttcgtcgggtcagacatggagcgctgg
ggcctcctgaggctgaggaagctgttgcatgagcacacaaatccaattcccggtgaggaa
aagtggcccgtggtcggccagttctccagcatcggctccatgggagcagacaaaaccaaa
tggctggtgggggagtttcagcgcaccctgaccacacttgggaaatcctctcttcgctca
gatcctcccatgcacttgctgtatccatcagtggatgatgtaaggctgagtttagaaggc
tacccagctggcggctctcttccttacagcgttcagacagctcagaaacagctctggctc
cactcctacttccaccgctggaaggcaaactgcacagggaggagtcacgccatgccacac
attaaaacctacatgagggtatcgccagatttcacacagctcgcctggttccttgtcaca
agtgcaaacctgtccaaggcagcgtggggagcactggagaagaacaacactcagatgatg
gtgcgttcgtacgagctgggagtcctcttcgtgccgtcagcttttaacatgaagacgttc
cccgttgataaaaatccatttcctgtctcttcatccacctctggtttcccggtgcccttt
gacctccctccttcaagctattctccaaaagaccagccgtggatctggaacatcccgtac
agccaagagccggacacacatggcaacatctgggttccttcttga

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