Kryptolebias marmoratus (mangrove rivulus): 108242159
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Entry
108242159 CDS
T05608
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
kmr04040
]
108242159 (scn1lab)
Ion channels [BR:
kmr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
108242159 (scn1lab)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
IQCJ-SCHIP1
Spem1
Motif
Other DBs
NCBI-GeneID:
108242159
NCBI-ProteinID:
XP_017282302
LinkDB
All DBs
Position
LG23:complement(14607807..14674301)
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AA seq
2013 aa
AA seq
DB search
MAQLLVPPGPDSFRPFVPESLAAIERRIAEEEARRPRAERRSDEDDENGPKPNSDLEAGK
SLPFIYGDIPPNLVSTPLEDLDPYYTNQKTFIVLNRGKAIFRFNATSALYILNPFNPLRR
LAIKVLVHSMFSMLIMFTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGFC
VGKFTFLQDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGA
LIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVRIVNHNNDSNITLSDTGFNNT
GLNVTGFNSTFNWTEYINDERNYYYIPGRRDALLCGNGSGAGLCPEGFVCIKGGRNPDYG
YTSFDTFSWAFLSLFRLMTQDFWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLINLILAV
VAMAYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEDAQVAAAAATESGEYSGRGGPTSGS
SSGMSRLSSKSAKERRNRRKKRKQREEEERGGCDKFHKSESEDSIKRSSFRFSIDANRLS
YEKRCSSPNQSLLSVRGTLFSPRRNSRASLFSFRGRARDMGSENDFADDEHSTFEESDSR
RGSLFLPRRLERRCSAVSQTSLGVPRIVLPANGKMHCSVDCNGVVSLVGGTSVTTSPVGL
LLPEGTTTDTEIKKRRSGFLQPSMDYLEEPGGRQRAMSVASILTNTMEELEESRQKCPPC
WYRFANTCLIWDCCPAWLKIKEVVSTVVMDPFVDLTITICIVLNTLFMAMEHYPMTKEFD
KVLSVGNLVFTGIFTAEMCFKIIALDPYYYFQEGWNIFDGIIVSLSLMELGLANVEGLSV
LRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYK
ECVCKISSDCELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQTMCIIVFMMVMV
IGNLVVLNLFLALLLSSFSADNLAATDEDSEMNNLQIAVGRIQRGISYIKSKVRQFLRSL
CFGSGKGSGLAEESKPLDELHSNGKGNCISNHTQLEITKDPGGVYMMEGNGRPGGGLVVG
VGGDTPGKYPMEECDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFSSDSSDLEGSKEKL
DVDPQPLSSSEGSTVDIRPPGDGVESVELEPEESLDPEACFTEGCIRRFQCCQVSEDVGW
LKSWWNLRKTCFIIVEHNWFESFIIFMILLSSGALAFEDIYIEQRRTIKTVLEYSDKVFT
YVFILEMLLKWVAYGFVKYFTNAWCWLDFLIVDVSLVSLVANALGYSELSAIKTLRTLRA
LRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYRCVNIT
DDELLPISVVNNKTECLHSDNNNKTRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAA
VDSRNVEDQPDYEVNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMT
EEQKKYYNAMKKLGSKKPQKPIPRPTNAFQGFVFDCITKQAFDIVIMILICLNMVTMMVE
TDDQTQDMDRILYWINLVFIVLFTGECALKMISLRHYYFTIGWNIFDFVVVILSIVGMFL
SEVIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVM
FIYAIFAMSNFAYVKRESGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNKREPDC
DSQMEHPGNSYKGNCGNPSVAIFFFVSYIIICFLIVVNMYIAVILENFSVATEESAEPLS
EDDFEMFYEVWERFDPDATQFVEYSKLSDFADALDPPLRIPKPNMNQLITMDLPMVSGER
IHCLDILFAFTKRVLGEGGEMDMLRGQMEERFMASNPSKVSYEPITTTLRRKQEEMSAII
IQRAFRRYMIRQAMKKASALYKEQLKEGVRDPDKDVMVICKFNENSTSDKTDMTPSTASP
PSYNSVTKSDKDKYEKENREKENKGKDLKDKKK
NT seq
6042 nt
NT seq
+upstream
nt +downstream
nt
atggcacagctgcttgtaccgcccggaccagacagcttccgccccttcgtccccgagtcg
ctggccgccatcgaaaggcgcatcgccgaggaggaggcccggagaccacgggcggaacgc
cgcagcgacgaagatgatgaaaatgggcccaagcccaacagcgacttggaggcggggaaa
tctctgcccttcatctacggggacatccctccaaacctggtgtcaacccctctggaggac
cttgatccctactacaccaatcagaagaccttcatagtattgaatcgcgggaaggcaatc
ttccgtttcaatgccacttctgccttgtacatcctaaaccccttcaaccctctaaggaga
ttagctattaaagttttagtgcactcgatgttcagcatgttgatcatgttcaccatcctg
accaactgtgctttcatgactctgagtaatcccccggagtgggccaagaatgtagagtac
acattcacagggatttacaccttcgagtccctcataaagatcctggccaggggcttctgt
gtggggaagttcacgttcctgcaggacccatggaactggctggatttcagcgtcatactc
atggcatatgtcacagagtttgtggacctgggcaatgtctcagcactacgaaccttcagg
gttctgcgagctctgaaaacaatatcagtcatcccaggcctgaagaccatcgtgggcgcc
ctgatccagtcagtgaagaagctgtcggacgtgatgattctcaccgtgttctgcctcagt
gtctttgccctgatcggcctgcagctcttcatgggcaacctgaggcagaagtgcgtgcgc
atcgtgaaccacaacaacgacagcaacatcacgctcagcgatacgggcttcaacaacaca
ggcctcaatgtcacgggcttcaattccaccttcaactggacggagtacatcaacgatgag
aggaattactattacatccctggccgtagggatgctctgctctgtggaaatggcagtggc
gcagggctctgtccagagggcttcgtgtgtatcaaagggggtcgtaatccagattatggc
tacacgagcttcgacaccttcagctgggccttcctgtccctgttccgactcatgacgcag
gacttttgggaaaacctctaccagcagactttgcgtgcggctgggaagccctacatgatc
tttttcgtgctggtgatatttctgggctccttttacctcatcaatctgatcctggctgtg
gtggccatggcttatgacgagcagaaccaggccaccatcgaggaggctcagcagaaggag
gaggagttccaggccatgctggagcagctgaagagacagcaggaggatgctcaggttgcc
gcggcagcagccacggagagtggcgagtacagcggcagagggggccccacctccgggtcg
tcctcggggatgtccaggctcagctcgaaaagcgccaaggagcgacgcaaccggcggaag
aagaggaagcagcgggaggaggaggagaggggcggatgcgacaagtttcacaagtctgag
tccgaggacagcatcaagaggtccagcttccgcttctccattgatgccaaccggctgtct
tatgaaaaaagatgctcctcacccaaccagtctcttctcagtgttcgcgggaccctcttc
tcacctcggaggaacagccgagccagcctcttcagtttccgtggccgagcgcgcgacatg
ggctccgagaacgactttgccgacgacgagcacagcaccttcgaggagagcgacagccgc
cgcggctccctgttcctgccgcgtcgccttgagcgccgctgcagcgccgtcagccagacc
agcctcggggtaccgcggatcgtgctgcccgccaacgggaagatgcactgctctgtagac
tgcaacggagtggtgtcgctggtcggtgggacttctgtaacaacctctcctgtaggtctc
ctgctgccggagggaacaacaacagatactgagataaagaagcgtaggtcgggtttcctc
cagccgtccatggactatctcgaagaaccggggggccggcagagagccatgagtgtggcc
agtatcctgacgaacaccatggaagagctcgaagaatccagacagaagtgcccaccctgc
tggtatagatttgccaacacctgcctgatctgggattgctgtccggcatggctgaaaatc
aaagaagttgtcagcacggtggtcatggacccgtttgtggacctgaccataacaatttgc
atcgtcctcaacaccctattcatggctatggagcactaccccatgaccaaagaattcgat
aaagtcctctcagtcggaaacctggtattcactggcatcttcacagcagagatgtgtttc
aagattatcgccctggatccctactactactttcaggaaggctggaacatctttgatggc
atcattgttagtcttagcctgatggagcttggcttggccaacgtagaaggcctgtctgtg
ctcaggtcctttagattgctgagggtcttcaaactggccaagtcgtggcccacgctcaac
atgctgatcaagatcatcgggaactcggtgggcgctctgggtaacctgactcttgtgctg
gccatcatcgtgttcatcttcgccgtggtgggcatgcagctgttcggcaagagctacaag
gagtgcgtgtgcaagatttccagcgactgcgagctgccgcgctggcacatgcacgacttc
ttccactccttcctcatcgtgttccgggtgctgtgcggagaatggattgagaccatgtgg
gactgcatggaggtggcggggcagaccatgtgtataatcgtcttcatgatggtcatggtt
ataggaaaccttgtggttctgaatcttttcctggctctcctcctgagctcattcagtgct
gacaacctggcagcgacagatgaggacagcgagatgaacaacctgcagatcgccgtgggt
cgcatccaacggggcatctcgtacatcaagtccaaggtgcggcagttcctccgaagcctc
tgctttggcagcggtaagggctccggtctggctgaggagagcaaacccctggatgagctg
cacagcaacgggaagggcaactgcatttctaaccacactcaactggagatcaccaaagac
cctggtggggtgtacatgatggagggcaacggaagaccagggggagggctggttgtcggg
gtaggtggggataccccgggcaagtacccaatggaggaatgtgactatatgtcatttatt
cacaaccccagcctgacggtgacggtgcccatagctgtgggcgagtcagacttcgagaac
ctaaacacggaagatttcagcagtgactcttctgatctggagggcagcaaagagaagctt
gacgtcgacccacagcctttgagctcatcagaggggagcacagttgatattcgaccccca
ggggatggtgttgaatcagtggagctggagccagaggagtcactggatccagaagcctgc
ttcacagaaggctgcatccgtaggttccagtgctgtcaggtcagcgaggacgtaggctgg
ttaaagagctggtggaacctccgcaaaacctgcttcatcatcgtggagcacaactggttt
gaatccttcatcatattcatgatcctgctcagcagtggagcgctggcatttgaggatatt
tacatcgagcagcggcgaaccatcaaaacagtgctggagtattcagacaaagtgttcact
tatgtcttcatcctggaaatgctgctgaagtgggtggcgtacggcttcgtcaagtacttc
accaacgcctggtgctggcttgacttccttattgtcgatgtgtccttggtgagccttgta
gcaaacgctctgggctactctgagctcagcgccatcaaaactctgaggacactgcgagcc
ctccggcccctgagggccctgtctcggtttgagggcatgagggttgtagtgaacgcactc
ctgggggccatcccctccatcatgaacgtgctcctggtctgcctcatcttctggctcatc
ttcagcatcatgggcgtcaacctgttcgcagggaagtactaccgctgcgtcaacatcacc
gatgacgagcttctccccatcagcgttgtcaacaacaagacagaatgcctgcattcagat
aataacaacaagacacgctggaagaatgtcaaaatcaactttgacaatgtcggggccggt
tatctggctctgttacaagtggcaacatttaaaggttggatggacatcatgtatgcagct
gtcgactccagaaatgtggaagaccagcctgattatgaagtgaacctgtacatgtacctc
tactttgtcatcttcatcatctttggctccttcttcactcttaatctgtttattggcgtc
atcatcgacaacttcaaccagcagaaaaaaaagtttggaggtcaagacatcttcatgacg
gaggagcagaagaaatactacaatgccatgaagaagttgggctccaaaaaaccacaaaag
cctattcctcggccaacgaatgcatttcaaggctttgtgtttgactgtatcacaaagcag
gcgtttgacattgtaatcatgatcctcatctgccttaacatggtgaccatgatggtagaa
acagatgaccagacacaagacatggacaggatcctttactggatcaacctggttttcatt
gtgctcttcactggggagtgtgcgctcaagatgatctctttgcgtcactattattttacc
attggttggaacatctttgactttgtggtggtgatcctttcgattgtaggtatgttttta
tctgaagttatcgagaagtactttgtgtctccaacgctgttccgagtgatccgactcgcc
cgaataggccgcatccttcgccttatcaaaggtgccaagggcatccggacgctcctgttt
gccttgatgatgtcactccctgccctgttcaacattggccttctgctcttcctggttatg
ttcatctatgccatctttgccatgtccaactttgcttatgtcaaaagggagtcaggcatc
gatgacatgttcaattttgagaccttcgggaacagtatgatatgtttgtttcagattaca
acttcagctgggtgggacggactgctggcacccatactgaacaagagggagcccgactgt
gacagccaaatggaacacccagggaactcctacaagggcaactgtggcaacccttcggtg
gccatatttttctttgttagctacatcattatttgctttctcattgtggttaacatgtac
atcgccgtcatcctggagaacttcagcgtggctacagaggagagtgctgagccgctgagc
gaggacgatttcgagatgttctacgaagtgtgggagcgcttcgaccctgatgccacgcag
tttgtggaatacagcaagctgtcagactttgcagatgctctagacccaccgttgcgcatt
ccaaagcctaatatgaaccaactcataactatggacctgccgatggtgagtggcgagcgt
atccactgcctcgacatcctgtttgctttcaccaagcgagtgctgggagaaggtggggag
atggacatgttacgtggacagatggaggagcgcttcatggcctccaacccctccaaggtt
tcctacgagcccattaccactaccctgcgccgcaagcaggaggaaatgtcggccataatc
atccagagagccttccgccgctacatgatccgccaggccatgaagaaggcctccgccctg
tacaaggagcagctaaaggagggtgtccgcgacccagacaaggacgtgatggtcatctgc
aagttcaacgagaactccacgtcggacaaaacagacatgactccttccaccgcctccccg
ccctcctacaacagtgtgacaaagtcagacaaggacaaatacgaaaaagaaaaccgagaa
aaggaaaacaaagggaaagacttgaaagacaaaaagaaatag
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