Kryptolebias marmoratus (mangrove rivulus): 108242212
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Entry
108242212 CDS
T05608
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04510
Focal adhesion
kmr04512
ECM-receptor interaction
kmr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108242212 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108242212 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108242212 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
kmr00535
]
108242212 (col9a2)
Proteoglycans [BR:
kmr00535
]
Extracellular matrix (ECM) proteoglycans
Others
108242212 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108242212
NCBI-ProteinID:
XP_017282425
UniProt:
A0A3Q3B6C3
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Position
LG5:complement(15070738..15090396)
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AA seq
691 aa
AA seq
DB search
MAALPALLKTWVTLQTLCLALAQVIGPPGPRGPPGPPGPSGTPGSDGIDGEKGARGPPGP
LGQKGEPGQPGPDGPPGEDGIVGLIGAKGDRGPVGRPGSKGQLGPSGEPGPPGVGLPGLA
GAPGPIGLPGQIGRPGPKGIMGPPGSPGLPGPPGKPGPPGRFIGLDEGSADFQCPLNCPA
GPKGPQGLQGVKGHKGRAGVLGDPGSIGKPGFKGDVGLSGEQGIPGPPGPTGLRGYPGMM
GPKGEAGPRGYKGISGPVGIPGPPGEEGPRGPPGESGDKGDKGSRGIQGPQGAVGKKGEN
GLPGIDGKDGTPGIPGIKGAPGQPGMPGPPGPQGAAGLPGTSGAKGEAGVKGEAGRRGSV
GPSGAPGPLGEPGIPGEPGMEGIPGPKGDRGQRGPVGPQGGVGKHGSKGERGPTGVPGAQ
GLPGIKGDKGFQGKVGPKGDIGDPGVEGLAGEKGEKGISGEPGPKGQQGIRGDLGHNGPT
GDPGKPGDQGPPGLSGPRGLNGERGIPGMPGILGPPGRDASDQHIIEVVLKMMQEKLAAV
AVSAKRAVLGGAGVMGPPGPPGPPGSPGPQGPHGLPGPRGIPGIIGVHGQIGNTGLKGKR
GAKGERGDPGRAHPGPTGPPGIQGPPGIDGVARDGRPGERGPQGAAGEAGRPGKPGLPGL
LGYCEAAMCLAASAYTSPRLQEAGTIKGPNV
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctgctctccctgccttgctgaagacctgggttacactgcagaccttgtgcctggct
ctggctcaagtgataggtccacctggacctcgaggcccaccaggaccaccaggcccctct
ggcactcctggatccgatggcattgatggggagaaaggagcacgtggaccacctggtcca
ctagggcaaaaaggcgagccgggacagccgggtcctgatggaccaccaggggaggatggt
attgttggtttgattggagcaaagggtgaccgtggtcctgttgggaggcctggctcaaag
ggtcaactaggtccaagtggtgaacctggacctccaggagttggtcttccaggtctggct
ggtgctccagggccaattggtcttccaggtcaaattggacgacctggtccaaagggcata
atgggaccacctggatctccaggacttcctggacctccaggcaagccgggacctccagga
aggtttattggtttagatgaaggtagtgcagacttccagtgtcctctcaactgcccagca
ggacctaaaggtccacagggactgcagggtgttaagggacataaaggacgtgctggtgtt
cttggggaccctggcagcatagggaaaccgggatttaagggagatgtcgggctctctggg
gaacaaggcatcccaggacccccgggtccaacaggtcttaggggttatccaggaatgatg
ggtcccaaaggagaggcaggacctcgtggctacaagggcatcagtggacctgtaggaatt
cctggacctcctggtgaagagggacctagaggaccacctggagagtcaggagacaaggga
gataaaggcagccgaggtattcagggtcctcaaggtgcagttggcaaaaagggagaaaat
ggtctgccagggattgatggaaaagacggcacacctggaatacctggaatcaaaggagct
cctgggcagcctggtatgccaggtcctcctgggcctcagggagcagcaggattacctggc
acctccggggcaaagggagaagctggagttaagggggaagcaggtcgtaggggttctgtt
ggcccatctggtgctcctggacctttgggggagcctggtattcccggtgagcctggaatg
gaagggattcctggacctaagggtgacagaggacagcgaggaccagtagggccacaggga
ggagtcggcaaacatggaagcaaaggagaaagaggccccactggtgttccaggtgcacag
ggtcttcctgggattaaaggagacaagggtttccaaggcaaagttggtccaaagggggac
ataggtgaccctggcgttgagggattggctggcgagaaaggcgaaaagggtatatctggt
gaacctgggcccaaaggacagcaaggaattaggggtgaccttgggcacaatggacccact
ggagaccctggtaaaccaggagatcagggtccgccagggctatctggtccaaggggactc
aacggagagcgagggatacctggcatgccgggcattctggggccaccaggacgtgatgca
tctgaccagcatattattgaagtggttctaaagatgatgcaggagaagcttgcagcggtg
gcagtgagtgcaaagagagccgtgctcggtggtgcaggtgtaatgggacctcctgggcct
cctggaccaccaggatcacctggccctcagggtccacatggcttaccaggaccccgtgga
atacctggtatcattggagtgcatgggcagattggaaacacagggctcaaaggaaaaaga
ggggcaaagggggagagaggggatccaggtagagctcacccaggaccaacaggaccccca
ggaatacaaggtcctcctggtattgatggtgtagcccgagacggcaggcctggagagaga
ggacctcagggagctgccggagaggctggtcgccctggtaagcctggactcccgggtctc
ctagggtactgcgaggcagcaatgtgtctggctgcatcggcatacacctcaccaagatta
caggaggcaggaacaatcaaaggacccaatgtttag
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