Kryptolebias marmoratus (mangrove rivulus): 108243090
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Entry
108243090 CDS
T05608
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04510
Focal adhesion
kmr04512
ECM-receptor interaction
kmr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108243090
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108243090
09142 Cell motility
04820 Cytoskeleton in muscle cells
108243090
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
kmr00535
]
108243090
Proteoglycans [BR:
kmr00535
]
Extracellular matrix (ECM) proteoglycans
Others
108243090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
108243090
NCBI-ProteinID:
XP_017283801
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All DBs
Position
LG5:21228784..21276244
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AA seq
947 aa
AA seq
DB search
MTFHSMRLERKHPYHPAVLTCSPFCLALLSLVFTLSLGQLDLSRLDGDTVCPPMRTGQDD
LPGFDLITQFQLDMIPLKGVRKVDGSTSLQVAYRLDREANFQIPTMLNFPRGFPDEYSFM
TTFRMIKNTVNKVWNVWQIVDEDGYKQAGLRLNGDQQALEYFLMGADGNLQTVTFPGLSV
LFNTKWHKVMIGVEHYQVTLYVDCQPVDQKPIKGKGPINTAGDTLIGRLDSDPEASVVFE
LQWMLIHCDPKRAQRESCSELPPTEMFANAEPEKAVPGPPGAPGPEGPTGAPGENGRDGR
DGLPGSPGSPGAPGSKGDKGEIGFPGQRGLPGLPGPSGPSGPMGPRGPVGERGLPGFPGP
AGPPGPTSEGPPGPPGKPGIPGDEGNIGPEGPPGPRGGPGVSGPPGPPGPPGPVGPPGAN
SEGSGEACPAACPAGPRGLAGLPGMKGHEGVPGEPGKDGKPGEKGDTGEPGSQGAPGRIG
DDGQRGPIGFPGTPGEKGDRGPPGYNGAPGPTGPPGAPGVEGIRGRLGLPGPKGDDGAVG
PQGLQGVPGEKGEPGEPGKDGLDGLPGADGAKGEPGASGAVGVRGITGIPGLPGKQGIVG
PPGEKGETGTEGSTGPAGLPGKTGEPGKNGADGKPGEKGATGDAGKEGLVGPTGPPGLQG
VKGHKGNTGAKGMKGHTGHKGDQGPIGPVGPKGSQGDPGLTGNSGVKGDQGAPGVSGIKG
ERGEKGQRGATGADGRPGQPGHEGAAGPMGARGLEGEPGLPGPPGSRGLPGPKVSDEKLR
EMCSAVVQEQLEEFMKEMLKRPAPISAPGTPGPAGPPGPPGPAGTSGATGAPGPMGPKGH
PGFYGLPGAPGQKGEAGERGVKGAKGEDGVGIKGSPGAPGVPGVPGPPGIGKDGKNGERG
ETGSPGIPGSAGPRGPSGQPGLCDPSACMNRLPPLYMISGKKSSTYK
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgaccttccacagcatgcgtttggaaaggaagcacccataccatccagcagtgttgaca
tgctcccccttttgtttggctcttctgtccctcgtcttcactttgtctcttggacaatta
gacctgagccgactggacggtgatactgtctgcccaccaatgagaactggacaagatgac
cttccaggttttgatctaatcacccagtttcagttggacatgattcccctgaaaggtgtg
aggaaggtggatggctccacctccctccaggtggcctaccgtctcgacagggaggctaac
ttccaaattccaacaatgctcaactttccacgtggcttcccggatgagtactctttcatg
accacctttcgcatgatcaagaacacagtgaacaaggtgtggaacgtctggcagatagtg
gatgaagatggctacaaacaagccggactccggctgaatggggatcagcaggctctggag
tacttcctgatgggtgcagatggaaacttgcagactgtcacttttcctggcctttctgtg
ctttttaacaccaagtggcacaaggtgatgattggcgtcgagcactatcaggtcacattg
tatgtggactgccaacctgtggatcagaaacccatcaagggcaagggccccatcaacaca
gcgggagacactcttattggcaggctggattctgatcctgaagcttctgtggtgttcgag
ctgcagtggatgttgattcactgcgacccaaagagagcccagagagaaagctgcagcgag
cttcctcccactgagatgtttgccaatgctgagcctgaaaaggcagttccaggtccccct
ggtgctcctggcccagagggccccacaggggccccaggagaaaatggcagggatggaaga
gatggtcttccagggtctcccggcagtccaggtgctcctggcagcaaaggggataagggg
gagattggttttccaggacagagaggcctgcctggtcttcctggaccttctggtccttct
ggtccaatgggtcccagagggcctgtaggagaaagaggtcttcctggcttccctggacct
gcaggtcctcctggcccaacaagtgaaggaccaccaggtcctccaggaaaaccaggaatc
cctggagatgaagggaacattggaccagagggtccacctggacccagaggaggacctggc
gtttcaggccctcctggtccacctggtccaccagggcctgtgggaccacccggtgccaac
agtgaggggagtggggaagcttgtcccgctgcctgccctgctggacctcgaggattggct
gggttgccagggatgaagggacatgaaggagttccaggtgagcctggaaaagatggaaaa
cctggagaaaagggagacactggagaaccaggctctcagggagcaccaggtcgcattggt
gatgatggacaaagaggtccaattggctttccgggaacccctggagagaagggagacagg
ggtccacctggttacaatggggctcctggacccaccggcccacctggagctcctggtgtg
gagggaatccgtggacgcctgggtttgccagggcctaagggagatgatggagctgtggga
cctcaaggattgcagggtgttccaggggagaaaggagaacccggagaacctggcaaagat
ggcttggatggacttcctggagctgatggtgcaaaaggagaacctggtgcatcaggagct
gttggtgtcagagggatcactgggattccaggactgccaggaaagcagggaatagtggga
ccccctggagaaaagggtgaaactggcactgagggatccactgggccagctggacttcct
ggaaaaactggggagcctgggaaaaatggagctgatggtaaacctggagaaaaaggagct
actggagatgcaggaaaagaagggctggtggggccaacaggtccaccaggactacagggt
gtaaaaggacataaaggtaacactggtgccaaaggaatgaaaggccatactgggcacaaa
ggtgatcagggacccattggaccagtgggaccaaaaggaagtcagggggacccaggtctt
acaggaaattctggagtcaaaggagatcagggcgctcctggtgtgtctggaatcaaagga
gagcgtggagaaaaaggccaaagaggagctacaggagctgatggcagaccgggccaacct
ggacatgaaggtgcagcgggtcccatgggagcccgagggttggagggagaaccgggtctt
cctggaccaccaggctccagagggttacctggtccaaaagtgagtgatgaaaagcttcgg
gagatgtgctcagcagtcgtgcaagagcaattagaagagtttatgaaagagatgttgaag
agaccagcacccattagtgctccaggtacccctggaccagcaggaccacctggacctcct
ggaccagctggaacatcaggagcaacaggtgccccggggccaatgggccccaaaggccat
ccaggattctatggacttccaggtgcaccaggccagaaaggtgaagcaggggaaagggga
gtcaaaggagccaagggagaggatggtgtgggaatcaaaggaagtccaggtgcacctggt
gtaccaggtgtacctggtccccctggcattgggaaggatggtaaaaatggagaacgaggt
gagacaggaagtcctggcattccaggatctgctggtccaaggggtccgtcaggacagcct
ggcctttgtgacccatcagcttgtatgaacagacttccacctctgtatatgatcagtgga
aagaaatcctccacttataaatga
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