Kryptolebias marmoratus (mangrove rivulus): 108243213
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Entry
108243213 CDS
T05608
Symbol
zgc:113232
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04510
Focal adhesion
kmr04512
ECM-receptor interaction
kmr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108243213 (zgc:113232)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108243213 (zgc:113232)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108243213 (zgc:113232)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
kmr00535
]
108243213 (zgc:113232)
Proteoglycans [BR:
kmr00535
]
Extracellular matrix (ECM) proteoglycans
Others
108243213 (zgc:113232)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108243213
NCBI-ProteinID:
XP_017283989
UniProt:
A0A3Q3GEU1
LinkDB
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Position
LG16:5183524..5199965
Genome browser
AA seq
668 aa
AA seq
DB search
MGASCDKQGSFLSGLFVFVLCFISSLCQEEYSGYHSGEKRVYEESSAVDHYNNIGSRQPE
YQPEPTHYYDEDQRPEEEGYDPPRVTMITEDIFPFETITESHYAKEDTETMQVPFKFPAG
PDTDSSEESGGDAALGAEGPTECDCEPGEPGFAGFAGPKGSRGLQGQTGLPGIQGREGYK
GTKGVQGRGGDTGPAGDVGPEGDEGASGFSGGMGDPGLQGNPGERGELGLKGDVGMEGPR
GGVGAPGETGPSGDPGSPGSKGGRGIKGSHGDQGKQGLRGKDGPKGQTGAPGFPGDVGER
GYSGYPGQPGAVGPNGPKGTKGQEGLPGSDGEPGEDGPIGVPGVIGEPGPFGVKGSKGDR
GVRGPRGRVGRVGGQGGPGDAGMPGKPGPKGLQGQIGFKGETGPDGEKGAAGRKGIKGDR
GQKGAKADRGDKGQRGPKGTVGRTGSPGPVGPPGMPGARGDRGPIGDLGVKGRAGQKGVQ
GPSGPGLTDEQVLQICKDVVRAQLSQYAPSIQAKCAQGCPINDRTLIGPPGGRGQPGPPG
RAGKAGKAGEKGSRGVQGDRGAEGQKGAQGGRGQKGPKGITGDPGTGLPGPDGPQGLRGL
PGHPGEAKNGMEGSRGPRGFPGLVGPPGVVGIPGVPGFCEARDCSIHAPVMRKEQGLVKG
PVSSDIQL
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgggagcttcctgtgacaagcagggttccttcctctcaggactctttgtgtttgtgttg
tgcttcatctcttctctctgccaggaggaatattctggataccactcaggtgaaaaacgt
gtttatgaagagtcgtctgcagttgaccactataacaacataggctctcgtcaacctgag
tatcagcctgagccgactcattactatgatgaagaccagcgaccagaggaggagggatat
gacccccccagagtaaccatgataaccgaggacatctttcccttcgagaccatcactgag
tcccactacgcgaaggaggacaccgagaccatgcaggtgccgtttaagttcccagcaggt
ccagatactgattcatcagaggagtctggaggggacgcagcactcggagcagaaggacca
acagagtgtgactgcgaacctggagagcccggttttgctggttttgcaggaccaaaggga
tcgagaggcctgcagggtcaaactggtctgccagggattcaaggcagggagggttataaa
ggaaccaaaggagttcagggaagaggaggagacactggaccagcgggagacgtcggaccc
gaaggagatgaaggagcttctggtttctctggagggatgggagatcctggacttcaaggg
aacccaggcgagcgtggagaactcggtctgaagggggacgtcggtatggagggccctcgc
ggaggagtcggcgctcctggtgagactgggcctagtggtgacccaggttccccaggatca
aaaggaggtagaggtatcaaggggtctcatggtgaccaaggcaagcagggtcttcgagga
aaagatggaccaaagggtcagaccggagcaccagggtttccaggagacgttggtgaacga
ggctactctggttatccaggacaaccaggagctgttggaccaaatggaccaaaaggcact
aaaggtcaagaaggccttccaggcagtgatggtgaacctggagaggacggtccaatagga
gtcccgggggtgataggagagcctggaccatttggtgttaagggtagcaaaggtgatcgt
ggtgtaagagggcctcgaggcagagtgggcagagtgggaggtcaaggagggcctggagat
gctggcatgcctggaaaaccaggaccaaagggcctccagggccagatagggttcaaaggt
gaaacaggaccagacggtgagaagggtgcagcagggaggaaaggcattaaaggagacaga
ggacaaaagggagccaaggctgatcgcggtgacaaaggacagcgaggaccaaaaggcacg
gtgggccgaactggcagtccgggccccgtaggaccacctggcatgccaggggccagagga
gaccgaggtccaattggtgacctgggagttaaaggtcgagcgggacaaaaaggagtccaa
ggtccatctggtcctggtctgacagatgagcaggtcttgcagatctgtaaagatgtggtc
cgagcccagctctcccagtacgccccctcaattcaagccaagtgtgcccagggctgtccc
atcaacgaccggactctaattggacctccaggaggccgaggacaaccaggaccaccaggc
agagctggtaaagcaggaaaagctggagaaaaaggatccaggggtgttcaaggtgacaga
ggggcagaaggacagaaaggagctcagggtggtagaggtcagaagggacctaaaggcatc
acaggtgatccagggacaggcctgccaggacctgacggaccacagggactcagaggtttg
ccaggtcacccaggggaagctaaaaatgggatggagggttctcgcggacctcggggcttc
cctggtctggtgggtccacctggtgtggtgggaatcccaggagtgccggggttttgtgag
gcacgagactgcagtattcatgcaccagtgatgcgcaaggagcagggtctggtgaaagga
cctgtgagttcagacatccaactctga
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