Kryptolebias marmoratus (mangrove rivulus): 108245310
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Entry
108245310 CDS
T05608
Symbol
col9a1a
Name
(RefSeq) collagen, type IX, alpha 1a
KO
K08131
collagen type IX alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04510
Focal adhesion
kmr04512
ECM-receptor interaction
kmr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108245310 (col9a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108245310 (col9a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108245310 (col9a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
kmr00535
]
108245310 (col9a1a)
Proteoglycans [BR:
kmr00535
]
Extracellular matrix (ECM) proteoglycans
Others
108245310 (col9a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108245310
NCBI-ProteinID:
XP_037830517
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All DBs
Position
LG3:complement(1381594..1410382)
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AA seq
663 aa
AA seq
DB search
MGLLRIFQEPLLVLLLQIVLICSAQIVSVGPRTPPGPPGPPGIPGVSGVDGIDGERGEDS
TVTGPPGPDGDNGRDGAPGSAGLPGADGPVGPSGDPGLVGPKGSKGDPGPRGPPGEPGVG
PDGQDGIPGTDGLPGELGKVGPPGVRGKRGPVGLPGPAGARGPPAVYEGENLCPNACPSG
LTGHSGLPGMKGHKGVKGESGEPGRQGHKGEEGDQGPPGEVGTQGLPGPGGPRGYPGIMG
SKGDRVRWFHTLDFGERGPPGIRGVPGPKGGPGLSGPDGHEGIPGLPGSKGIPGKSGAPG
DTGTQGLPGLPGAYGPKGHGGIKGNTGDPGVVGIMGSPGKQGERGEQGEVGPVGARGGPG
EHGEKGPDGPPGLPGARGSKGNPGLPGLPGPAGHRGQKGDRGGVGLSGPKGEQGPPGAEG
ISGERGDMGDEGEPGEKGSSGPPGETGNKGPEGGRGQPGKEGKHGQPGPRGMQGDRGVPG
LPGPQGPPGKAPTDSHIKQVCRRVMQEQLAQLAASLRRPESGIAGLPGPPGPPGPPGPTG
ENGFPGHTGSRGLPGLKGPPGLLGHKGPKGDQGDRGDRGPTVRGPKGDPGVPGLPGEPGR
PAYGSPGRDGERGLRGVPGINGVPGPPGHPGMNSYCEPSQCVMPVMAQPVSAKDSGMKGP
NEI
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgggccttttaaggatttttcaggagcctcttctggtgcttttactgcagattgtgctg
atttgctcagctcagatagtttcagtcggtcccagaacccccccaggacccccaggacct
cctggcatacctggtgtctccggagtggatgggatagatggggaacgaggagaagactcc
acagtgactggaccacctggtcctgacggtgataacggcagagacggggctcctggctct
gcaggccttccaggggcagacggacctgttggaccctctggggatccgggtcttgtggga
ccaaaaggctcaaaaggggatcctggacctcgagggcctcctggagagcctggtgtagga
cctgatgggcaggatggtattcctggtacagatggcctaccaggtgaactgggaaaagtt
ggccctcctggagtgagagggaagagaggtccagttggtctccctggtcctgctggggct
cggggacctccagctgtttatgaaggcgagaatctgtgtcccaatgcctgtccctcaggt
ctgactggacattctggccttcctggcatgaaaggccacaaaggtgttaagggtgaatca
ggtgagcccggaagacaaggacacaagggagaggaaggtgatcaaggaccacctggtgaa
gttggaactcaaggactaccaggcccaggtggaccaagaggctatcctggaataatgggt
tcaaaaggtgacagggtaagatggtttcatacactagactttggggaacgaggaccacca
ggaatcagaggagtaccaggaccaaaaggaggacctggactttctggtccagatgggcat
gagggaatacctgggctgcctgggtcaaagggtattccaggaaaaagtggggctccaggt
gacactggcacacagggacttcctggtttgccaggtgcctatggaccaaaaggacatggt
ggtataaagggcaatacaggagacccaggagttgtaggaataatggggtctccagggaaa
cagggagagcgtggcgagcagggagaggtgggacctgttggagccagaggaggacctggt
gaacatggagagaaaggacctgatgggcctccaggattaccaggagccaggggaagcaaa
gggaatccaggccttccaggacttcctggccctgcaggtcacagaggccagaagggagac
aggggtggagttggtctcagtggtccgaaaggagaacagggacctccaggtgctgaagga
atatcaggagaaagaggagacatgggtgatgaaggagaaccaggagagaaaggatcgtca
ggcccaccaggagaaacgggaaacaaaggaccggaaggaggccgaggacaaccaggcaaa
gagggcaagcatggtcagccaggaccacgaggcatgcagggagacaggggggtaccaggc
ctgccaggaccacagggaccaccggggaaagctccaacagattcacacatcaaacaagtc
tgcagaagggtaatgcaagagcagctggcccagctagcagccagcctgagaagacctgaa
tcaggtatcgccgggcttcccggccctcctggtccacctggaccaccaggccctactgga
gaaaatggatttcctggccatactgggtcaagaggtctccctggtctaaagggtccacct
gggttacttggtcacaaaggacctaaaggtgatcagggtgaccgaggggacagaggacca
actgtgagaggacccaaaggagatccaggggttcctggtctcccaggtgaacccggtcgc
ccagcttacggtagtcccggccgtgatggagagaggggactccgtggtgttcctgggatc
aacggcgtgccgggccctccgggtcaccctggcatgaacagttactgtgaaccatcgcag
tgcgtcatgcccgtgatggcacagccagtctctgcaaaagactctggtatgaagggcccc
aatgagatatga
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